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Os11g0471100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.41 (0.0465) R2 : 0.409
β1 : 2.74 (0.169) R2dD : 0.354 R2D : 0.322
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.25 (0.315) R2dE : 0.0706 R2E : 0.0561
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.459 (0.101) R2dN8 : 0.0376 R2N8 : -0.0306
σ : 0.864
deviance : 344.37
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 430.1
memory length : 4
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23.3
open length of G : 22.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
329.22 0.852 6.41 2.74 1.05 1.27 1.92 0.557 0.396 13.1 45.06 9 23.1 23.7
329.66 0.846 6.41 2.74 1.03 1.25 1.54 -- 0.396 13.2 44.78 8 23.1 23.6
338.88 0.864 6.41 2.8 0.91 1.12 -- -1.05 0.401 13.3 45.06 9 23.1 23.7
339.42 0.858 6.4 2.79 0.998 1.22 -- -- 0.403 13.2 45.42 8 23.2 23.4
342.99 0.863 6.41 2.79 -- 1.86 -- -4.23 0.462 -- 319.6 12 23 23.6
370.86 0.903 6.44 2.72 0.286 -- 1.47 -- 0.292 14.7 -- -- -- --
378.08 0.911 6.44 2.76 0.306 -- -- -- 0.301 15.6 -- -- -- --
344.37 0.864 6.41 2.74 -- 2.25 -- -- 0.459 -- 430.1 4 23.3 22.8
541.08 1.08 6.44 -- 0.688 1.18 -- -- 0.101 13.6 82.06 7 23.1 23.8
383.28 0.915 6.44 2.75 -- -- -- -- 0.293 -- -- -- -- --
579.05 1.13 6.51 -- 0.251 -- -- -- -0.00605 15.7 -- -- -- --
543 1.09 6.47 -- -- 2.24 -- -- 0.156 -- 372.8 7 23.5 22.5
582.55 1.13 6.51 -- -- -- -- -- -0.0116 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 332.33 radiation 40.0 10 < th dose dependent rect. 23 23
2 333.39 temperature 15.0 30 > th dose independent rect. 23 23
5 334.71 humidity 50.0 270 > th dose independent rect. 5 18
6 335.55 humidity 80.0 30 > th dose dependent rect. 22 1
8 335.58 atmosphere 1000.0 30 > th dose independent rect. 23 23
9 335.94 humidity 80.0 10 > th dose independent rect. 22 1
11 335.99 temperature 25.0 10 > th dose independent rect. 22 2
12 336.03 wind 5.0 30 < th dose dependent rect. 22 1
15 336.06 radiation 40.0 14400 < th dose dependent rect. 23 1
18 336.12 atmosphere 1005.0 30 > th dose independent rect. 22 1
19 336.12 temperature 20.0 30 > th dose dependent rect. 22 1
21 336.15 wind 9.0 1440 < th dose independent rect. 23 1
22 336.15 temperature 10.0 1440 > th dose independent rect. 23 1
25 336.15 temperature 30.0 1440 < th dose independent rect. 23 1
29 336.15 humidity 50.0 1440 > th dose independent rect. 23 1
39 336.15 atmosphere 995.0 1440 > th dose independent rect. 23 1
40 336.15 radiation 1.0 1440 < th dose independent rect. 23 1
60 336.15 temperature 10.0 1440 > th dose independent rect. 24 23
63 336.15 radiation 1.0 1440 < th dose dependent rect. 23 1
69 336.17 wind 3.0 30 < th dose independent rect. 22 1
71 336.19 atmosphere 1005.0 30 > th dose dependent rect. 22 1
75 336.22 precipitation 0.1 30 < th dose independent rect. 22 1
77 336.22 precipitation 0.1 30 < th dose dependent rect. 22 1
90 336.37 temperature 10.0 30 > th dose independent rect. 22 1
92 336.37 temperature 30.0 30 < th dose independent rect. 22 1
93 336.37 humidity 50.0 30 > th dose independent rect. 22 1
96 336.37 atmosphere 995.0 30 > th dose independent rect. 22 1
97 336.37 atmosphere 1010.0 30 < th dose independent rect. 22 1
99 336.37 radiation 1.0 30 < th dose independent rect. 22 1
105 336.37 radiation 1.0 30 < th dose dependent rect. 22 1
116 336.51 wind 1.0 30 > th dose independent rect. 22 1
117 336.54 atmosphere 1015.0 30 < th dose dependent rect. 22 1
119 336.62 precipitation 0.1 30 < th dose independent rect. 23 23
120 336.62 precipitation 0.1 30 < th dose dependent rect. 23 23
122 336.68 temperature 30.0 30 < th dose dependent rect. 22 1
125 336.76 humidity 90.0 30 < th dose independent rect. 22 1
139 337.00 humidity 50.0 270 > th dose independent rect. 2 23
140 337.08 wind 9.0 30 < th dose independent rect. 23 23
142 337.18 wind 1.0 30 > th dose dependent rect. 22 1
143 337.25 humidity 90.0 30 < th dose dependent rect. 22 1
172 337.52 humidity 70.0 90 > th dose independent rect. 17 8
181 337.96 humidity 70.0 10 > th dose independent rect. 18 7
196 338.88 humidity 70.0 270 > th dose independent rect. 15 8
197 338.93 temperature 25.0 90 > th dose dependent rect. 21 10
206 339.81 humidity 50.0 270 > th dose dependent rect. 15 8
210 340.13 radiation 40.0 30 < th dose independent rect. 23 23
217 340.47 radiation 10.0 10 < th dose independent rect. 23 23
230 341.33 humidity 70.0 30 > th dose independent rect. 14 11
235 341.62 humidity 50.0 90 > th dose dependent rect. 17 8
262 342.51 humidity 50.0 270 > th dose dependent rect. 5 18
265 342.74 temperature 30.0 270 < th dose independent rect. 17 6
275 342.91 wind 3.0 14400 < th dose independent rect. 2 2
279 343.02 temperature 30.0 270 < th dose independent rect. 15 8
283 343.06 wind 3.0 14400 > th dose independent rect. 2 2
287 343.12 radiation 40.0 10 < th dose dependent rect. 1 21
321 343.71 temperature 30.0 90 < th dose independent rect. 17 8
327 343.83 humidity 70.0 30 > th dose independent sin 13 NA
328 343.84 wind 1.0 270 > th dose independent rect. 23 6
331 343.90 humidity 70.0 30 < th dose independent rect. 16 4
360 344.39 humidity 90.0 14400 < th dose dependent rect. 2 2
366 344.47 temperature 15.0 270 > th dose dependent rect. 19 4
367 344.51 wind 1.0 270 > th dose independent rect. 23 19
371 344.54 radiation 1.0 270 < th dose dependent rect. 5 18
374 344.57 radiation 30.0 10 < th dose dependent rect. 1 11
382 344.76 radiation 30.0 10 < th dose independent rect. 1 21
383 344.77 wind 3.0 14400 > th dose independent rect. 2 11
388 344.85 wind 3.0 14400 < th dose independent rect. 2 11
398 344.92 temperature 15.0 270 > th dose independent rect. 23 6
414 345.07 wind 3.0 14400 < th dose independent rect. 24 14
430 345.18 radiation 10.0 270 < th dose dependent rect. 23 7
438 345.27 wind 5.0 270 < th dose independent rect. 18 5
446 345.34 radiation 10.0 10 < th dose dependent rect. 1 16
454 345.40 atmosphere 1015.0 270 < th dose independent rect. 5 18
455 345.44 humidity 80.0 30 < th dose dependent rect. 16 15
458 345.51 humidity 80.0 30 < th dose dependent rect. 16 12
461 345.53 precipitation 0.1 270 < th dose independent rect. 23 6
463 345.53 precipitation 0.1 270 < th dose dependent rect. 23 6
465 345.55 radiation 10.0 10 < th dose independent rect. 1 21
470 345.61 radiation 1.0 270 < th dose independent rect. 23 6
472 345.61 radiation 1.0 270 < th dose dependent rect. 15 8
475 345.63 wind 7.0 270 < th dose independent rect. 23 6
495 345.74 temperature 30.0 270 < th dose independent rect. 23 6
496 345.74 humidity 50.0 270 > th dose independent rect. 23 6
499 345.74 atmosphere 995.0 270 > th dose independent rect. 23 6
504 345.74 temperature 10.0 270 > th dose independent rect. 5 18
505 345.74 humidity 80.0 30 < th dose dependent rect. 16 8
507 345.75 radiation 1.0 270 < th dose independent rect. 6 17
511 345.81 wind 3.0 14400 < th dose independent rect. 20 18
520 345.89 radiation 20.0 10 < th dose dependent rect. 1 6
530 345.97 humidity 50.0 720 < th dose independent rect. 15 20
533 345.98 atmosphere 1010.0 270 < th dose independent rect. 23 6
538 346.00 radiation 10.0 10 < th dose independent rect. 1 17
541 346.01 wind 3.0 14400 < th dose independent rect. 19 11
560 346.13 humidity 50.0 270 > th dose independent rect. 15 23
563 346.14 humidity 60.0 270 > th dose independent rect. 17 17
564 346.14 wind 3.0 14400 > th dose independent rect. 20 18
578 346.19 radiation 10.0 10 < th dose dependent rect. 1 13
581 346.20 radiation 30.0 10 < th dose dependent rect. 1 17
605 346.35 humidity 50.0 720 < th dose independent sin 11 NA
606 346.35 humidity 80.0 14400 > th dose independent rect. 4 1
610 346.39 wind 3.0 14400 < th dose independent sin 7 NA
622 346.44 wind 9.0 270 < th dose independent rect. 5 18
628 346.46 humidity 80.0 30 < th dose dependent rect. 16 4
633 346.48 wind 1.0 90 > th dose independent rect. 1 5
636 346.51 humidity 50.0 720 < th dose independent rect. 15 3
653 346.52 humidity 80.0 14400 < th dose independent rect. 4 1
656 346.52 radiation 1.0 270 < th dose independent rect. 16 7
663 346.55 wind 7.0 270 < th dose independent rect. 23 19
674 346.62 wind 3.0 14400 > th dose independent sin 6 NA
699 346.72 wind 3.0 14400 > th dose independent rect. 19 12
711 346.77 humidity 50.0 720 > th dose independent sin 11 NA
733 346.84 wind 1.0 14400 > th dose dependent rect. 1 13
740 346.87 humidity 50.0 720 > th dose independent rect. 11 23
753 346.95 humidity 50.0 720 > th dose independent rect. 11 14
756 346.95 temperature 20.0 270 > th dose dependent rect. 23 19
759 346.96 humidity 50.0 720 > th dose independent rect. 11 12
775 347.02 radiation 40.0 10 < th dose dependent sin 7 NA
792 347.08 wind 5.0 14400 < th dose dependent rect. 2 12
795 347.10 temperature 20.0 270 > th dose independent rect. 18 5
798 347.11 radiation 10.0 10 < th dose dependent rect. 1 9
807 347.13 humidity 50.0 30 > th dose independent rect. 23 23
808 347.13 radiation 10.0 10 < th dose dependent sin 3 NA
827 347.21 temperature 30.0 270 < th dose independent rect. 18 15
836 347.25 wind 9.0 14400 < th dose dependent rect. 1 13
846 347.29 precipitation 0.1 270 < th dose independent rect. 5 18
850 347.29 precipitation 0.1 270 < th dose dependent rect. 5 18
875 347.39 humidity 70.0 270 < th dose independent rect. 13 7
915 347.48 humidity 80.0 270 < th dose dependent sin 15 NA
917 347.49 humidity 70.0 270 < th dose independent rect. 13 19
927 347.52 humidity 60.0 720 < th dose dependent rect. 16 1
936 347.55 temperature 15.0 270 > th dose independent rect. 13 16
969 347.63 humidity 80.0 270 < th dose dependent rect. 14 16
970 347.64 wind 1.0 270 > th dose independent rect. 18 5
988 347.67 atmosphere 995.0 270 > th dose independent rect. 23 19