Os11g0465200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Bx2-like protein.
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Os11g0465200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Bx2-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.64 | 0.331 | 13.3 | 1.03 | 0.666 | 0.843 | 0.777 | 0.438 | -0.207 | 20.4 | 50.22 | 10 | -- | -- |
| 49.97 | 0.332 | 13.3 | 1.04 | 0.652 | 0.817 | 0.898 | -- | -0.207 | 20.7 | 50.22 | 10 | -- | -- |
| 51.29 | 0.336 | 13.3 | 0.999 | 0.659 | 0.853 | -- | 0.709 | -0.206 | 20.3 | 50.22 | 10 | -- | -- |
| 52.36 | 0.339 | 13.3 | 1.02 | 0.653 | 1 | -- | -- | -0.206 | 20.3 | 42.94 | 9 | -- | -- |
| 75.25 | 0.406 | 13.3 | 0.996 | -- | 0.899 | -- | 0.603 | -0.213 | -- | 50.22 | 10 | -- | -- |
| 60.87 | 0.366 | 13.3 | 1.05 | 0.832 | -- | 0.921 | -- | -0.224 | 22.9 | -- | -- | -- | -- |
| 64.44 | 0.376 | 13.3 | 1.01 | 0.827 | -- | -- | -- | -0.227 | 22.9 | -- | -- | -- | -- |
| 75.84 | 0.407 | 13.3 | 1.02 | -- | 1.11 | -- | -- | -0.213 | -- | 15.33 | 5 | -- | -- |
| 79.71 | 0.418 | 13.3 | -- | 0.648 | 0.986 | -- | -- | -0.32 | 20.5 | 42.94 | 9 | -- | -- |
| 106.92 | 0.483 | 13.3 | 1.03 | -- | -- | -- | -- | -0.222 | -- | -- | -- | -- | -- |
| 91.44 | 0.447 | 13.3 | -- | 0.836 | -- | -- | -- | -0.34 | 23 | -- | -- | -- | -- |
| 103.02 | 0.474 | 13.3 | -- | -- | 1.06 | -- | -- | -0.325 | -- | 42.94 | 9 | -- | -- |
| 134.9 | 0.542 | 13.3 | -- | -- | -- | -- | -- | -0.336 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.23 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 2 | 49.32 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 17 | 49.38 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 20 | 49.55 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 5 | 9 |
| 26 | 49.57 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 21 | 17 |
| 33 | 49.64 | humidity | 50.0 | 10 | > th | dose dependent | no | NA | NA |
| 34 | 49.67 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 35 | 49.69 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 46 | 49.69 | humidity | 50.0 | 10 | > th | dose dependent | sin | 1 | NA |
| 50 | 49.73 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 52 | 49.77 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 55 | 49.77 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 56 | 49.77 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 58 | 49.81 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 61 | 49.84 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 64 | 49.85 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 65 | 49.85 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 84 | 49.91 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 118 | 50.01 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 121 | 50.03 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 22 | 15 |
| 151 | 50.10 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 169 | 50.13 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 187 | 50.16 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 192 | 50.19 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 194 | 50.19 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 196 | 50.19 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 21 | 22 |
| 198 | 50.20 | humidity | 70.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 199 | 50.20 | humidity | 70.0 | 1440 | < th | dose independent | sin | 5 | NA |
| 207 | 50.23 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 23 | 17 |
| 210 | 50.25 | radiation | 20.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 239 | 50.33 | radiation | 10.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 241 | 50.33 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 7 | NA |
| 243 | 50.33 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 246 | 50.36 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 21 | 20 |
| 253 | 50.38 | humidity | 80.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 272 | 50.41 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 292 | 50.42 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 381 | 50.57 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 428 | 50.63 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 1 | 19 |
| 441 | 50.65 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 463 | 50.65 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 5 |
| 481 | 50.67 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 14 |
| 491 | 50.67 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 495 | 50.67 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 505 | 50.68 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 509 | 50.69 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 549 | 50.73 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 554 | 50.74 | humidity | 90.0 | 10 | < th | dose dependent | no | NA | NA |
| 570 | 50.76 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 572 | 50.77 | humidity | 90.0 | 30 | < th | dose dependent | sin | 2 | NA |
| 578 | 50.78 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 582 | 50.78 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 18 | 21 |
| 583 | 50.78 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 611 | 50.81 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 0 | NA |
| 613 | 50.81 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 620 | 50.82 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 6 | 10 |
| 629 | 50.83 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 6 | 8 |
| 638 | 50.84 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 653 | 50.86 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 676 | 50.89 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 1 | 15 |
| 693 | 50.91 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 707 | 50.91 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 20 | 20 |
| 709 | 50.92 | radiation | 10.0 | 1440 | > th | dose independent | no | NA | NA |
| 792 | 50.92 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 22 | 18 |
| 810 | 50.94 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 828 | 50.95 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 6 | 15 |
| 849 | 50.96 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 878 | 50.98 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 912 | 51.00 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 5 | 10 |
| 942 | 51.01 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 3 | 20 |
| 957 | 51.02 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 962 | 51.02 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 978 | 51.02 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 1 | 23 |