Os11g0462800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0462800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.78 | 0.531 | 3.31 | 0.854 | 0.506 | -0.009 | 1.08 | -2.56 | 0.6 | 11 | 25.7 | 900 | -- | -- |
| 132.03 | 0.535 | 3.36 | 0.517 | 0.502 | 0.857 | 0.603 | -- | 0.516 | 10.9 | 17 | 2198 | -- | -- |
| 128.96 | 0.533 | 3.33 | 0.752 | 0.531 | 0.12 | -- | -2.03 | 0.585 | 11.2 | 26.6 | 1554 | -- | -- |
| 133.43 | 0.538 | 3.36 | 0.559 | 0.508 | 0.748 | -- | -- | 0.516 | 11.1 | 17 | 2949 | -- | -- |
| 143.84 | 0.562 | 3.35 | 0.686 | -- | -0.26 | -- | -2.22 | 0.509 | -- | 26.6 | 1554 | -- | -- |
| 135.83 | 0.546 | 3.37 | 0.351 | 0.51 | -- | 0.533 | -- | 0.461 | 11.1 | -- | -- | -- | -- |
| 137.03 | 0.548 | 3.37 | 0.373 | 0.507 | -- | -- | -- | 0.463 | 11.1 | -- | -- | -- | -- |
| 147.96 | 0.567 | 3.36 | 0.508 | -- | 0.554 | -- | -- | 0.575 | -- | 29.7 | 809 | -- | -- |
| 139.3 | 0.55 | 3.38 | -- | 0.496 | 0.659 | -- | -- | 0.428 | 11.1 | 14.2 | 4230 | -- | -- |
| 153.07 | 0.578 | 3.38 | 0.361 | -- | -- | -- | -- | 0.459 | -- | -- | -- | -- | -- |
| 140.7 | 0.555 | 3.38 | -- | 0.503 | -- | -- | -- | 0.422 | 11.1 | -- | -- | -- | -- |
| 153.96 | 0.58 | 3.41 | -- | -- | -0.342 | -- | -- | 0.364 | -- | 30 | 787 | -- | -- |
| 156.5 | 0.584 | 3.39 | -- | -- | -- | -- | -- | 0.419 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.31 | humidity | 90 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 2 | 126.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 3 | 126.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 4 | 126.37 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 7 | 126.44 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 8 | 126.45 | temperature | 25 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 20 | 126.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 60 | 126.78 | humidity | 80 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 61 | 126.78 | humidity | 80 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 65 | 126.80 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 76 | 126.84 | humidity | 60 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 97 | 126.88 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 101 | 126.91 | humidity | 90 | 14400 | < th | dose independent | rect. | 3 | 7 |
| 127 | 126.99 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 146 | 127.03 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 7 |
| 159 | 127.05 | humidity | 70 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 160 | 127.05 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 216 | 127.14 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 277 | 127.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 293 | 127.20 | humidity | 80 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 395 | 127.30 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 396 | 127.30 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 453 | 127.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 10 |
| 477 | 127.36 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 502 | 127.38 | humidity | 80 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 524 | 127.40 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 544 | 127.41 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 568 | 127.43 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 12 |
| 577 | 127.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 10 |
| 830 | 127.59 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 948 | 127.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 979 | 127.68 | humidity | 80 | 14400 | > th | dose dependent | rect. | 3 | 11 |