Os11g0462600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os11g0462600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.82 | 0.501 | 6.35 | 0.401 | 0.935 | -1.97 | -0.268 | -2.32 | 0.0453 | 19.7 | 26.17 | 109 | -- | -- |
| 121.84 | 0.514 | 6.4 | 0.119 | 0.954 | -1.78 | -0.41 | -- | -0.0277 | 19.7 | 27.26 | 80 | -- | -- |
| 113.94 | 0.497 | 6.35 | 0.404 | 0.915 | -1.98 | -- | -2.31 | 0.0422 | 19.8 | 26.35 | 117 | -- | -- |
| 121.72 | 0.514 | 6.39 | 0.06 | 0.91 | -1.83 | -- | -- | -0.0256 | 19.8 | 27.2 | 110 | -- | -- |
| 149.78 | 0.57 | 6.34 | 0.306 | -- | -2.18 | -- | -2.18 | -0.0188 | -- | 27.61 | 244 | -- | -- |
| 169.56 | 0.61 | 6.31 | 0.491 | 1.14 | -- | -0.0218 | -- | 0.359 | 18.2 | -- | -- | -- | -- |
| 169.56 | 0.61 | 6.31 | 0.491 | 1.14 | -- | -- | -- | 0.359 | 18.2 | -- | -- | -- | -- |
| 156.3 | 0.582 | 6.39 | -0.0755 | -- | -2.08 | -- | -- | -0.113 | -- | 28.38 | 265 | -- | -- |
| 121.69 | 0.514 | 6.4 | -- | 0.896 | -1.86 | -- | -- | -0.0489 | 19.9 | 27.22 | 110 | -- | -- |
| 237.26 | 0.72 | 6.28 | 0.46 | -- | -- | -- | -- | 0.333 | -- | -- | -- | -- | -- |
| 175.92 | 0.62 | 6.32 | -- | 1.14 | -- | -- | -- | 0.304 | 18.2 | -- | -- | -- | -- |
| 156.35 | 0.582 | 6.38 | -- | -- | -2.09 | -- | -- | -0.0932 | -- | 28.38 | 261 | -- | -- |
| 242.83 | 0.727 | 6.3 | -- | -- | -- | -- | -- | 0.282 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.85 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 3 | 108.77 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 6 | 111.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 8 | 112.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 10 | 112.45 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 15 | 112.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 17 | 113.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 19 | 113.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 38 | 114.71 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 39 | 114.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 61 | 115.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 96 | 116.46 | temperature | 15 | 90 | > th | dose dependent | sin | 7 | NA |
| 108 | 116.83 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 110 | 116.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 128 | 117.31 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 156 | 117.82 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 181 | 118.19 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 220 | 118.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 245 | 119.12 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 293 | 119.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 305 | 119.95 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 309 | 120.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 312 | 120.15 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 381 | 120.90 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 718 | 124.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 804 | 125.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 805 | 125.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 824 | 125.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 857 | 125.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 878 | 126.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 910 | 126.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 953 | 126.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 977 | 126.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |