Os11g0460700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os11g0460700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.89 | 0.577 | 4.29 | -2.13 | 0.638 | 1.39 | -0.552 | -0.4 | -0.403 | 22.5 | 24.73 | 789 | -- | -- |
| 150.93 | 0.572 | 4.28 | -2.06 | 0.644 | 1.35 | -0.594 | -- | -0.386 | 22.5 | 24.72 | 788 | -- | -- |
| 151.95 | 0.574 | 4.3 | -2.25 | 0.641 | 1.42 | -- | -1.15 | -0.439 | 22.3 | 24.66 | 808 | -- | -- |
| 152.35 | 0.575 | 4.28 | -2.03 | 0.654 | 1.32 | -- | -- | -0.383 | 22.4 | 24.66 | 788 | -- | -- |
| 171.37 | 0.61 | 4.33 | -2.56 | -- | 1.93 | -- | -2.27 | -0.554 | -- | 24.32 | 794 | -- | -- |
| 189.73 | 0.646 | 4.26 | -1.74 | 1.08 | -- | -0.235 | -- | -0.262 | 21.6 | -- | -- | -- | -- |
| 189.94 | 0.645 | 4.26 | -1.73 | 1.08 | -- | -- | -- | -0.261 | 21.6 | -- | -- | -- | -- |
| 173.38 | 0.613 | 4.27 | -2.12 | -- | 1.74 | -- | -- | -0.437 | -- | 24.38 | 788 | -- | -- |
| 252.17 | 0.74 | 4.21 | -- | 0.917 | 0.755 | -- | -- | 0.00568 | 21.8 | 29.14 | 816 | -- | -- |
| 259.1 | 0.752 | 4.23 | -1.72 | -- | -- | -- | -- | -0.263 | -- | -- | -- | -- | -- |
| 268.49 | 0.766 | 4.22 | -- | 1.08 | -- | -- | -- | -0.0689 | 21.5 | -- | -- | -- | -- |
| 285.6 | 0.787 | 4.21 | -- | -- | 1.32 | -- | -- | -0.154 | -- | 24.7 | 749 | -- | -- |
| 336.92 | 0.857 | 4.19 | -- | -- | -- | -- | -- | -0.0728 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 2 | 144.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 5 |
| 11 | 145.00 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 12 |
| 29 | 146.56 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 69 | 147.86 | temperature | 25 | 720 | > th | dose dependent | sin | 18 | NA |
| 91 | 148.43 | temperature | 20 | 270 | > th | dose dependent | sin | 15 | NA |
| 206 | 150.95 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 19 |
| 263 | 151.52 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 274 | 151.65 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 292 | 151.94 | temperature | 10 | 720 | > th | dose dependent | sin | 20 | NA |
| 305 | 152.08 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 9 |
| 333 | 152.43 | temperature | 30 | 270 | < th | dose dependent | sin | 16 | NA |
| 347 | 152.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 10 |
| 374 | 152.98 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 389 | 153.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 17 |
| 419 | 153.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 11 |
| 451 | 153.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 13 |
| 456 | 153.86 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 20 |
| 473 | 154.01 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 21 |
| 626 | 155.49 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 14 |
| 655 | 155.69 | temperature | 30 | 720 | > th | dose independent | sin | 16 | NA |
| 681 | 155.87 | temperature | 30 | 720 | > th | dose independent | sin | 11 | NA |
| 689 | 155.91 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 4 |
| 705 | 156.00 | temperature | 30 | 720 | < th | dose independent | sin | 17 | NA |
| 709 | 156.02 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 21 |
| 839 | 156.56 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 20 |
| 840 | 156.56 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 865 | 156.70 | temperature | 30 | 720 | < th | dose independent | sin | 11 | NA |
| 927 | 156.96 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 1 |
| 961 | 157.18 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 23 |