Os11g0459600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0459600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, uncharacterized transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 163.88 | 0.601 | 2.46 | 5.22 | 0.271 | -66.1 | -0.719 | 405 | 0.426 | 23.6 | 995.2 | 686 | -- | -- |
| 178.13 | 0.626 | 3.29 | 0.28 | 0.308 | -0.429 | -0.605 | -- | 0.411 | 24 | 995.2 | 686 | -- | -- |
| 165.7 | 0.6 | 2.46 | 5.24 | 0.285 | -66.9 | -- | 410 | 0.422 | 0.658 | 995.5 | 677 | -- | -- |
| 171.49 | 0.61 | 3.28 | 0.22 | 0.33 | 1.1 | -- | -- | 0.449 | 0.845 | 999.1 | 1539 | -- | -- |
| 168.49 | 0.608 | 0.466 | 17.4 | -- | -444 | -- | 2710 | 0.428 | -- | 995.8 | 655 | -- | -- |
| 178.41 | 0.626 | 3.29 | 0.276 | 0.311 | -- | -0.593 | -- | 0.413 | 0.0618 | -- | -- | -- | -- |
| 179.73 | 0.628 | 3.29 | 0.298 | 0.32 | -- | -- | -- | 0.414 | 0.819 | -- | -- | -- | -- |
| 177.91 | 0.621 | 3.28 | 0.236 | -- | 1.1 | -- | -- | 0.45 | -- | 999.1 | 1501 | -- | -- |
| 172.76 | 0.612 | 3.29 | -- | 0.325 | 1.15 | -- | -- | 0.425 | 0.708 | 999.3 | 1547 | -- | -- |
| 186.11 | 0.637 | 3.28 | 0.309 | -- | -- | -- | -- | 0.42 | -- | -- | -- | -- | -- |
| 182.06 | 0.631 | 3.3 | -- | 0.324 | -- | -- | -- | 0.381 | 0.86 | -- | -- | -- | -- |
| 179.34 | 0.624 | 3.28 | -- | -- | 1.15 | -- | -- | 0.427 | -- | 999.2 | 1501 | -- | -- |
| 188.63 | 0.641 | 3.29 | -- | -- | -- | -- | -- | 0.385 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.75 | atmosphere | 995 | 720 | < th | dose independent | rect. | 18 | 22 |
| 2 | 157.89 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 18 | 22 |
| 3 | 158.85 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 4 | 159.19 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 1 |
| 11 | 159.19 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 18 | 159.29 | atmosphere | 995 | 720 | < th | dose independent | sin | 7 | NA |
| 19 | 159.35 | atmosphere | 995 | 720 | < th | dose independent | rect. | 14 | 1 |
| 60 | 159.35 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 103 | 159.39 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 2 |
| 117 | 160.60 | atmosphere | 995 | 720 | < th | dose dependent | sin | 7 | NA |
| 119 | 160.90 | atmosphere | 995 | 720 | > th | dose independent | sin | 4 | NA |
| 120 | 160.93 | humidity | 80 | 30 | < th | dose dependent | rect. | 18 | 13 |
| 131 | 161.56 | humidity | 80 | 30 | < th | dose dependent | rect. | 18 | 8 |
| 133 | 161.58 | humidity | 80 | 30 | < th | dose dependent | rect. | 18 | 4 |
| 134 | 161.60 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 5 |
| 140 | 161.66 | humidity | 80 | 30 | < th | dose dependent | rect. | 18 | 2 |
| 163 | 162.69 | atmosphere | 995 | 720 | > th | dose independent | sin | 1 | NA |
| 223 | 164.00 | atmosphere | 995 | 720 | > th | dose independent | sin | 16 | NA |
| 228 | 164.13 | atmosphere | 995 | 720 | > th | dose independent | no | NA | NA |
| 237 | 164.19 | radiation | 20 | 270 | > th | dose independent | rect. | 16 | 1 |
| 266 | 164.64 | atmosphere | 995 | 720 | > th | dose independent | sin | 22 | NA |
| 272 | 164.95 | radiation | 20 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 316 | 165.17 | atmosphere | 995 | 720 | < th | dose independent | no | NA | NA |
| 508 | 165.21 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 1 | 6 |
| 514 | 165.39 | atmosphere | 995 | 720 | > th | dose independent | sin | 13 | NA |
| 518 | 165.46 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 6 |
| 520 | 165.47 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 9 |
| 522 | 165.49 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 4 |
| 530 | 165.60 | atmosphere | 995 | 720 | < th | dose independent | rect. | 18 | 1 |
| 550 | 165.60 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 587 | 165.91 | humidity | 80 | 30 | < th | dose independent | rect. | 18 | 2 |
| 664 | 166.41 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 17 | 7 |
| 672 | 166.49 | atmosphere | 995 | 720 | < th | dose dependent | no | NA | NA |
| 904 | 166.91 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 907 | 166.93 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 941 | 167.19 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 956 | 167.51 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 3 | 21 |
| 971 | 167.82 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 973 | 167.83 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 3 | 18 |
| 980 | 167.88 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 5 | 19 |
| 981 | 167.89 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 984 | 167.93 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 987 | 167.97 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 24 | 3 |
| 992 | 168.01 | wind | 3 | 30 | > th | dose independent | rect. | 18 | 2 |