Os11g0457700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os11g0457700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 164.92 | 0.603 | 5.12 | -1.44 | 0.322 | 3.53 | -0.262 | -1.26 | 0.12 | 13.8 | 14.9 | 1351 | -- | -- |
| 166.24 | 0.601 | 5.08 | -1.17 | 0.312 | 3.55 | -0.18 | -- | 0.189 | 13.7 | 14.21 | 1352 | -- | -- |
| 165.18 | 0.599 | 5.12 | -1.43 | 0.331 | 3.54 | -- | -1.19 | 0.123 | 13.8 | 14.85 | 1344 | -- | -- |
| 166.35 | 0.601 | 5.08 | -1.17 | 0.324 | 3.55 | -- | -- | 0.191 | 13.9 | 14.2 | 1353 | -- | -- |
| 168.2 | 0.604 | 5.12 | -1.42 | -- | 3.51 | -- | -1.05 | 0.127 | -- | 13.72 | 1527 | -- | -- |
| 377.76 | 0.911 | 4.94 | -0.0458 | 0.064 | -- | -0.425 | -- | 0.838 | 10.8 | -- | -- | -- | -- |
| 378.5 | 0.911 | 4.94 | -0.0626 | 0.0665 | -- | -- | -- | 0.837 | 11.4 | -- | -- | -- | -- |
| 169.34 | 0.606 | 5.09 | -1.19 | -- | 3.49 | -- | -- | 0.188 | -- | 13.72 | 1521 | -- | -- |
| 197.39 | 0.654 | 5.04 | -- | 0.391 | 3.1 | -- | -- | 0.395 | 13.5 | 12.52 | 1263 | -- | -- |
| 378.78 | 0.909 | 4.94 | -0.0644 | -- | -- | -- | -- | 0.836 | -- | -- | -- | -- | -- |
| 378.61 | 0.91 | 4.94 | -- | 0.0672 | -- | -- | -- | 0.844 | 11.5 | -- | -- | -- | -- |
| 201.39 | 0.661 | 5.04 | -- | -- | 2.99 | -- | -- | 0.394 | -- | 10.54 | 1491 | -- | -- |
| 378.89 | 0.909 | 4.94 | -- | -- | -- | -- | -- | 0.843 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 163.61 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 19 |
| 65 | 164.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 73 | 165.12 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 89 | 165.28 | temperature | 15 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 107 | 165.52 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 123 | 165.60 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 124 | 165.60 | temperature | 15 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 147 | 165.74 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 205 | 166.05 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 272 | 166.38 | temperature | 15 | 1440 | > th | dose dependent | sin | 17 | NA |
| 380 | 166.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 442 | 167.35 | temperature | 10 | 1440 | > th | dose dependent | sin | 2 | NA |
| 467 | 167.46 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 648 | 168.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 657 | 168.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 10 |
| 688 | 168.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 18 |
| 892 | 170.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 910 | 170.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 21 |
| 924 | 170.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 2 |