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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0449600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0215) R2 : 0.00389
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0603 (0.0452) R2dN8 : 0.00502 R2N8 : 0.00389
σ : 0.404
deviance : 75.02
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.18 0.391 2.92 -0.201 0.274 0.293 -0.84 -0.831 -0.0102 7.91 90 756 -- --
70.46 0.391 2.93 -0.128 0.305 0.291 -0.45 -- -0.00964 7.86 89.44 668 -- --
70.33 0.391 2.93 -0.203 0.157 0.339 -- -0.726 -0.0156 8.09 89 1247 -- --
71.03 0.393 2.93 -0.141 0.298 0.301 -- -- -0.00326 7.86 89.6 695 -- --
71.38 0.393 2.92 -0.228 -- 0.322 -- -1.04 -0.00202 -- 87.82 1406 -- --
72.2 0.398 2.92 -0.167 0.156 -- -0.535 -- 0.0368 7.02 -- -- -- --
72.95 0.4 2.92 -0.178 0.155 -- -- -- 0.0382 7.1 -- -- -- --
72.64 0.397 2.93 -0.134 -- 0.3 -- -- 0.0042 -- 89 1266 -- --
71.54 0.394 2.92 -- 0.304 0.323 -- -- 0.00953 7.98 89.26 710 -- --
74.21 0.403 2.93 -0.175 -- -- -- -- 0.0409 -- -- -- -- --
73.78 0.402 2.92 -- 0.153 -- -- -- 0.0579 7.17 -- -- -- --
73.1 0.398 2.93 -- -- 0.326 -- -- 0.0157 -- 89 1266 -- --
75.02 0.404 2.92 -- -- -- -- -- 0.0603 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.33 radiation 1.0 270 > th dose independent rect. 4 1
11 64.33 radiation 1.0 270 > th dose dependent rect. 4 1
21 65.82 radiation 1.0 43200 < th dose dependent rect. 3 1
23 65.84 wind 9.0 1440 < th dose independent rect. 3 1
24 65.84 temperature 10.0 1440 > th dose independent rect. 3 1
27 65.84 temperature 30.0 1440 < th dose independent rect. 3 1
31 65.84 humidity 50.0 1440 > th dose independent rect. 3 1
40 65.84 atmosphere 995.0 1440 > th dose independent rect. 3 1
41 65.84 radiation 1.0 1440 < th dose independent rect. 3 1
61 65.84 temperature 10.0 1440 > th dose independent rect. 4 23
64 65.84 radiation 1.0 1440 < th dose dependent rect. 3 1
82 65.90 temperature 25.0 90 > th dose independent rect. 1 1
84 65.90 temperature 20.0 30 > th dose dependent rect. 2 1
85 65.90 atmosphere 1005.0 30 > th dose dependent rect. 2 1
86 65.92 wind 3.0 30 < th dose dependent rect. 2 1
93 65.94 wind 1.0 30 < th dose independent rect. 2 1
95 65.94 atmosphere 1005.0 30 > th dose independent rect. 2 1
102 65.95 humidity 80.0 30 > th dose independent rect. 2 1
104 65.95 humidity 80.0 30 > th dose dependent rect. 2 1
107 65.96 temperature 10.0 30 > th dose independent rect. 2 1
109 65.96 temperature 30.0 30 < th dose independent rect. 2 1
110 65.96 humidity 50.0 30 > th dose independent rect. 2 1
113 65.96 atmosphere 995.0 30 > th dose independent rect. 2 1
114 65.96 atmosphere 1010.0 30 < th dose independent rect. 2 1
116 65.96 radiation 1.0 30 < th dose independent rect. 2 1
121 65.96 precipitation 0.1 30 < th dose independent rect. 2 1
122 65.96 temperature 10.0 30 > th dose independent rect. 3 23
123 65.96 atmosphere 995.0 30 > th dose independent rect. 3 23
124 65.96 humidity 50.0 30 > th dose dependent rect. 2 1
127 65.96 radiation 1.0 30 < th dose dependent rect. 2 1
132 65.96 precipitation 0.1 30 < th dose dependent rect. 2 1
137 66.00 atmosphere 1015.0 30 < th dose dependent rect. 2 1
141 66.04 humidity 90.0 720 < th dose independent rect. 2 1
142 66.04 temperature 30.0 30 < th dose dependent rect. 2 1
143 66.07 precipitation 0.1 30 < th dose independent rect. 3 23
144 66.07 precipitation 0.1 30 < th dose dependent rect. 3 23
150 66.10 wind 1.0 30 > th dose independent rect. 2 1
203 66.65 wind 1.0 10 < th dose independent rect. 9 18
209 66.72 wind 9.0 30 < th dose independent rect. 3 23
233 66.96 temperature 30.0 30 < th dose independent rect. 3 23
234 66.99 wind 1.0 10 > th dose independent rect. 8 23
235 67.01 humidity 90.0 720 < th dose independent rect. 24 8
237 67.05 humidity 90.0 720 > th dose independent rect. 3 1
248 67.38 humidity 60.0 30 < th dose dependent rect. 16 18
250 67.39 humidity 60.0 270 < th dose independent rect. 8 1
254 67.39 humidity 60.0 10 < th dose independent rect. 10 1
306 67.39 humidity 60.0 90 < th dose independent rect. 18 15
308 67.39 humidity 60.0 30 < th dose independent rect. 16 18
310 67.39 humidity 60.0 270 < th dose dependent rect. 8 1
312 67.39 humidity 60.0 10 < th dose dependent rect. 9 1
406 67.39 humidity 60.0 90 < th dose dependent rect. 18 15
478 67.41 humidity 60.0 1440 > th dose independent rect. 4 5
509 67.42 wind 1.0 10 < th dose dependent rect. 9 1
541 67.48 humidity 50.0 30 > th dose independent rect. 3 23
542 67.49 wind 1.0 10 < th dose independent rect. 9 1
551 67.52 humidity 90.0 720 < th dose dependent rect. 23 9
559 67.55 humidity 90.0 720 < th dose dependent rect. 24 1
607 67.62 radiation 40.0 30 > th dose dependent rect. 9 1
674 67.67 humidity 60.0 1440 > th dose independent rect. 24 9
706 67.70 atmosphere 1005.0 30 > th dose independent rect. 7 1
729 67.71 humidity 90.0 720 < th dose independent rect. 22 14
746 67.73 humidity 90.0 720 < th dose independent rect. 24 12
751 67.76 humidity 90.0 30 < th dose independent rect. 7 1
753 67.76 humidity 80.0 1440 > th dose independent rect. 22 10
756 67.77 humidity 90.0 720 < th dose independent sin 8 NA
789 67.78 humidity 90.0 720 > th dose independent rect. 1 3
795 67.80 humidity 60.0 1440 > th dose independent rect. 22 11
839 67.88 humidity 80.0 1440 > th dose independent rect. 23 8
864 67.94 humidity 50.0 720 > th dose dependent rect. 23 8
897 68.01 humidity 90.0 720 < th dose independent rect. 24 17
908 68.04 humidity 60.0 720 > th dose dependent rect. 23 10
909 68.05 wind 1.0 10 > th dose independent sin 19 NA
911 68.05 humidity 80.0 1440 > th dose independent rect. 23 4
945 68.15 humidity 80.0 1440 > th dose independent rect. 23 6
978 68.18 radiation 40.0 10 > th dose dependent sin 12 NA