Os11g0448700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os11g0448700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 663 | 1.21 | 4.53 | -7.3 | 1.28 | 2.94 | -1.14 | -16.3 | -1.69 | 7.37 | 24.96 | 1416 | 16.6 | 0.0154 |
| 814.22 | 1.33 | 4.31 | -4.72 | 1.57 | 3.4 | -1.75 | -- | -1.72 | 8.56 | -0.574 | 24010 | 16.8 | 1.14 |
| 666.05 | 1.2 | 4.53 | -7.32 | 1.28 | 2.92 | -- | -16.2 | -1.69 | 7.17 | 24.88 | 1407 | 16.6 | 0.0104 |
| 809.82 | 1.33 | 4.28 | -4.44 | 1.61 | 3.26 | -- | -- | -1.7 | 8.72 | -2.052 | 24062 | 16.9 | 0.0332 |
| 752.93 | 1.28 | 4.55 | -7.19 | -- | 2.91 | -- | -15.8 | -1.65 | -- | 24.89 | 1435 | 16.6 | 0.0143 |
| 882.78 | 1.39 | 4.02 | -2.21 | 1.27 | -- | -1.13 | -- | -0.541 | 7.27 | -- | -- | -- | -- |
| 885.95 | 1.39 | 4.02 | -2.24 | 1.27 | -- | -- | -- | -0.54 | 7.06 | -- | -- | -- | -- |
| 861.46 | 1.37 | 4.19 | -3.51 | -- | 2.41 | -- | -- | -1.51 | -- | 15.77 | 9583 | 17.3 | 4.93 |
| 993.84 | 1.47 | 4.01 | -- | 1.47 | 1.28 | -- | -- | -0.358 | 7.5 | -5.543 | 7455 | 17.7 | 0.289 |
| 970.97 | 1.46 | 4.05 | -2.21 | -- | -- | -- | -- | -0.517 | -- | -- | -- | -- | -- |
| 1018.12 | 1.49 | 3.96 | -- | 1.25 | -- | -- | -- | -0.29 | 7.17 | -- | -- | -- | -- |
| 1007.27 | 1.48 | 4.01 | -- | -- | 1.29 | -- | -- | -0.355 | -- | 23.7 | 1069 | 18.1 | 0.566 |
| 1100.32 | 1.55 | 3.99 | -- | -- | -- | -- | -- | -0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 662.64 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 2 | 663.68 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 3 | 663.92 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 27 | 667.90 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 30 | 668.45 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 33 | 668.98 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 8 |
| 36 | 669.46 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 8 |
| 38 | 669.54 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 42 | 669.80 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 3 |
| 58 | 670.87 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 5 |
| 83 | 672.67 | temperature | 20 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 92 | 673.22 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 138 | 674.81 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 8 |
| 141 | 674.86 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 148 | 674.92 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 149 | 674.92 | temperature | 20 | 43200 | > th | dose dependent | sin | 6 | NA |
| 176 | 675.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 245 | 676.17 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 8 |
| 263 | 676.52 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 268 | 676.56 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 313 | 677.01 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 319 | 677.06 | temperature | 20 | 43200 | > th | dose dependent | no | NA | NA |
| 321 | 677.07 | temperature | 20 | 43200 | > th | dose dependent | rect. | 12 | 23 |
| 334 | 677.13 | temperature | 20 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 336 | 677.13 | temperature | 20 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 345 | 677.19 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 350 | 677.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 355 | 677.21 | temperature | 20 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 359 | 677.23 | temperature | 20 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 365 | 677.25 | radiation | 1 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 561 | 678.13 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 578 | 678.23 | radiation | 1 | 43200 | < th | dose independent | sin | 8 | NA |
| 593 | 678.30 | radiation | 1 | 43200 | > th | dose independent | sin | 8 | NA |
| 633 | 678.45 | humidity | 90 | 43200 | > th | dose dependent | sin | 2 | NA |
| 635 | 678.46 | temperature | 25 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 687 | 678.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 696 | 678.83 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 7 |
| 718 | 678.95 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 812 | 679.42 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 818 | 679.44 | temperature | 20 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 876 | 679.61 | temperature | 25 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 903 | 679.78 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 20 |
| 912 | 679.87 | temperature | 20 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 937 | 680.03 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 952 | 680.15 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 959 | 680.21 | temperature | 25 | 43200 | < th | dose independent | sin | 3 | NA |
| 960 | 680.21 | temperature | 25 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 967 | 680.25 | temperature | 20 | 43200 | > th | dose independent | rect. | 4 | 1 |