Os11g0448100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0448100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.62 | 0.612 | 3.18 | 0.785 | 0.0435 | 3.16 | 0.626 | 5.94 | 0.272 | 16.8 | 20.09 | 4517 | -- | -- |
| 182.31 | 0.629 | 3.02 | 0.662 | 0.087 | 0.751 | 0.683 | -- | 0.325 | 16.4 | 28.05 | 2301 | -- | -- |
| 170.13 | 0.607 | 3.18 | 0.796 | 0.107 | 3.19 | -- | 5.99 | 0.273 | 12.5 | 20.04 | 4496 | -- | -- |
| 182.32 | 0.629 | 3.02 | 0.813 | 0.043 | 0.862 | -- | -- | 0.351 | 15.6 | 26.4 | 2894 | -- | -- |
| 170.73 | 0.609 | 3.19 | 0.785 | -- | 3.31 | -- | 6.3 | 0.268 | -- | 19.92 | 4494 | -- | -- |
| 194.19 | 0.653 | 3.07 | 0.423 | 0.0815 | -- | 0.558 | -- | 0.122 | 16.1 | -- | -- | -- | -- |
| 194.69 | 0.653 | 3.07 | 0.43 | 0.112 | -- | -- | -- | 0.125 | 13.1 | -- | -- | -- | -- |
| 181.8 | 0.628 | 3.02 | 0.893 | -- | 0.9 | -- | -- | 0.362 | -- | 24.39 | 4136 | -- | -- |
| 195.06 | 0.65 | 3.07 | -- | 0.0313 | 0.507 | -- | -- | 0.15 | 15.3 | 33.71 | 1150 | -- | -- |
| 195.47 | 0.653 | 3.07 | 0.426 | -- | -- | -- | -- | 0.123 | -- | -- | -- | -- | -- |
| 199.57 | 0.661 | 3.08 | -- | 0.105 | -- | -- | -- | 0.0772 | 12.9 | -- | -- | -- | -- |
| 194.75 | 0.65 | 3.06 | -- | -- | 0.48 | -- | -- | 0.153 | -- | 35.63 | 2359 | -- | -- |
| 200.25 | 0.661 | 3.08 | -- | -- | -- | -- | -- | 0.0756 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 166.64 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 2 | 166.79 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 3 | 167.66 | temperature | 20 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 7 | 167.92 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 5 |
| 11 | 167.98 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 19 | 168.20 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 23 | 168.23 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 24 | 168.25 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 44 | 168.50 | temperature | 20 | 4320 | < th | dose dependent | rect. | 24 | 19 |
| 52 | 168.56 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 59 | 168.61 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 9 |
| 98 | 168.88 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 9 |
| 103 | 168.90 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 5 |
| 106 | 168.90 | temperature | 20 | 4320 | < th | dose dependent | rect. | 12 | 19 |
| 111 | 168.93 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 131 | 169.00 | temperature | 20 | 4320 | < th | dose dependent | sin | 7 | NA |
| 295 | 169.50 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 327 | 169.59 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 338 | 169.61 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 395 | 169.72 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 19 |
| 443 | 169.79 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 8 | 13 |
| 455 | 169.81 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 8 | 13 |
| 456 | 169.81 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 18 |
| 497 | 169.88 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 520 | 169.90 | temperature | 20 | 4320 | < th | dose dependent | rect. | 15 | 23 |
| 575 | 169.99 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 23 | NA |
| 579 | 170.00 | temperature | 20 | 4320 | < th | dose independent | sin | 8 | NA |
| 607 | 170.05 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 19 |
| 616 | 170.07 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 23 | NA |
| 627 | 170.08 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 634 | 170.08 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 18 |
| 652 | 170.10 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 13 | 3 |
| 654 | 170.11 | atmosphere | 1015 | 4320 | > th | dose independent | sin | 23 | NA |
| 685 | 170.15 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 12 | 6 |
| 706 | 170.18 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 708 | 170.19 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 13 | 7 |
| 709 | 170.19 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 12 | 9 |
| 718 | 170.20 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 737 | 170.22 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 12 | 9 |
| 795 | 170.28 | temperature | 20 | 4320 | > th | dose independent | sin | 8 | NA |