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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0444800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.99 (0.0374) R2 : 0.452
β1 : 1.34 (0.139) R2dD : 0.122 R2D : -0.0201
β2 : 2.64 (0.187) R2dC : 0.932 R2C : -0.509
β3 : -2.93 (0.24) R2dE : 0.677 R2E : -0.763
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.05 (0.0799) R2dN8 : 0.281 R2N8 : 0.124
σ : 0.697
deviance : 224.25
__
_____
C
peak time of C : 19.5
E
wheather : temperature
threshold : 3.744
memory length : 331
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.62
open length of G : 17.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
223.61 0.703 3.98 1.39 2.48 -2.75 -0.987 0.703 1.08 19.5 6.048 316 7.73 18
223.44 0.696 3.99 1.34 2.49 -2.73 -0.688 -- 1.06 19.6 4.672 319 7.69 18
224.83 0.698 3.99 1.31 2.44 -2.71 -- -0.389 1.04 19.6 5.959 312 7.81 18
224.25 0.697 3.99 1.34 2.64 -2.93 -- -- 1.05 19.5 3.744 331 7.62 17.9
301.21 0.808 3.87 1.54 -- -1.16 -- 0.845 1.18 -- 4.831 1591 7.48 19.3
282.57 0.788 3.96 1 0.811 -- -0.701 -- 0.955 21.8 -- -- -- --
284.42 0.79 3.96 1.03 0.813 -- -- -- 0.955 21.9 -- -- -- --
301.03 0.808 3.9 1.41 -- -1.17 -- -- 1.14 -- 4.871 1579 7.58 20.2
269.56 0.765 3.98 -- 2.24 -2.31 -- -- 0.94 19.7 1.494 308 7.88 17.8
323.98 0.841 3.94 1.04 -- -- -- -- 0.955 -- -- -- -- --
312.22 0.827 3.99 -- 0.816 -- -- -- 0.841 22 -- -- -- --
340.24 0.862 3.98 -- -- -0.564 -- -- 0.802 -- -18.27 2 9.92 20.1
352.28 0.876 3.97 -- -- -- -- -- 0.84 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 227.26 temperature 10.0 270 > th dose dependent rect. 8 18
2 227.54 temperature 10.0 90 > th dose dependent rect. 8 21
51 237.33 temperature 10.0 90 > th dose dependent rect. 11 17
69 239.11 radiation 20.0 90 < th dose dependent rect. 5 4
73 239.32 radiation 20.0 10 < th dose dependent rect. 5 19
76 239.59 radiation 1.0 270 < th dose independent rect. 4 14
77 239.71 wind 1.0 270 > th dose independent rect. 4 1
82 239.93 temperature 10.0 270 > th dose dependent rect. 20 7
85 240.23 radiation 20.0 90 < th dose dependent rect. 5 6
95 241.08 temperature 30.0 10 < th dose dependent rect. 5 19
97 241.14 radiation 1.0 270 < th dose dependent rect. 4 14
98 241.15 temperature 30.0 30 < th dose dependent rect. 5 15
112 241.69 radiation 20.0 90 < th dose dependent rect. 5 8
120 242.11 radiation 20.0 90 < th dose dependent rect. 5 12
128 242.40 wind 1.0 90 > th dose independent rect. 4 4
133 242.53 radiation 10.0 10 < th dose independent rect. 5 19
144 242.92 wind 1.0 10 > th dose independent rect. 4 5
147 242.97 temperature 20.0 90 > th dose independent rect. 8 21
152 243.20 temperature 30.0 90 < th dose dependent rect. 15 18
155 243.30 temperature 15.0 10 > th dose dependent rect. 11 17
156 243.34 temperature 10.0 270 > th dose dependent rect. 17 22
159 243.45 radiation 20.0 90 < th dose independent rect. 5 3
164 243.60 atmosphere 995.0 10 > th dose dependent rect. 16 17
165 243.63 radiation 10.0 90 < th dose independent rect. 5 19
181 244.00 radiation 20.0 10 < th dose dependent rect. 6 3
184 244.04 temperature 10.0 1440 > th dose independent rect. 6 4
187 244.04 atmosphere 995.0 1440 > th dose independent rect. 6 4
188 244.04 atmosphere 1015.0 1440 < th dose independent rect. 6 4
189 244.04 temperature 10.0 1440 > th dose independent rect. 10 20
197 244.14 radiation 20.0 270 < th dose dependent rect. 3 7
206 244.33 humidity 50.0 14400 > th dose independent rect. 6 3
209 244.42 temperature 30.0 30 < th dose dependent rect. 5 13
215 244.51 radiation 20.0 4320 < th dose independent rect. 21 9
223 244.58 temperature 15.0 10 > th dose dependent rect. 24 16
227 244.64 temperature 10.0 270 > th dose dependent rect. 22 15
253 245.00 atmosphere 1005.0 270 > th dose dependent rect. 3 3
254 245.00 radiation 20.0 270 < th dose dependent rect. 3 14
255 245.04 temperature 20.0 30 > th dose dependent rect. 20 20
278 245.40 radiation 1.0 270 < th dose independent rect. 4 9
291 245.50 radiation 1.0 270 < th dose independent rect. 4 6
328 245.92 radiation 20.0 90 < th dose dependent rect. 5 15
336 245.99 atmosphere 995.0 270 > th dose dependent rect. 3 5
350 246.11 temperature 15.0 30 > th dose dependent rect. 20 23
364 246.23 temperature 15.0 270 > th dose independent rect. 6 22
391 246.57 atmosphere 1010.0 270 < th dose independent rect. 20 7
403 246.69 humidity 50.0 90 > th dose dependent rect. 5 15
418 246.86 humidity 60.0 90 > th dose dependent rect. 5 3
423 246.92 atmosphere 1005.0 90 > th dose independent rect. 5 3
472 247.36 radiation 20.0 270 < th dose independent rect. 3 6
475 247.41 wind 9.0 1440 < th dose independent rect. 6 3
479 247.41 humidity 50.0 1440 > th dose independent rect. 6 3
520 247.73 temperature 30.0 90 < th dose dependent rect. 13 22
538 247.89 atmosphere 1010.0 90 < th dose independent rect. 20 9
564 248.09 atmosphere 995.0 270 > th dose dependent rect. 14 18
575 248.18 radiation 1.0 43200 < th dose dependent rect. 1 3
577 248.19 atmosphere 1000.0 30 > th dose dependent rect. 14 19
610 248.45 humidity 80.0 90 > th dose independent rect. 5 3
618 248.47 temperature 30.0 30 < th dose independent rect. 5 15
633 248.59 temperature 20.0 10 > th dose dependent rect. 22 18
732 249.18 temperature 15.0 270 > th dose independent rect. 22 15
737 249.21 wind 9.0 90 < th dose independent rect. 8 21
755 249.33 temperature 30.0 90 < th dose dependent rect. 5 3
757 249.34 temperature 20.0 270 > th dose independent rect. 20 7
760 249.35 precipitation 0.1 270 < th dose independent rect. 6 22
762 249.35 precipitation 0.1 270 < th dose dependent rect. 6 22
765 249.37 precipitation 0.1 90 < th dose independent rect. 8 21
767 249.37 precipitation 0.1 90 < th dose dependent rect. 8 21
771 249.41 wind 1.0 10 > th dose independent rect. 16 17
804 249.62 atmosphere 1015.0 30 < th dose dependent rect. 9 20
823 249.73 temperature 20.0 30 > th dose independent rect. 20 9
830 249.75 wind 9.0 90 < th dose independent rect. 5 3
831 249.75 temperature 10.0 90 > th dose independent rect. 5 3
833 249.75 temperature 30.0 90 < th dose independent rect. 5 3
834 249.75 humidity 50.0 90 > th dose independent rect. 5 3
836 249.75 atmosphere 995.0 90 > th dose independent rect. 5 3
837 249.75 atmosphere 1015.0 90 < th dose independent rect. 5 3
850 249.81 humidity 60.0 90 > th dose dependent rect. 5 6
863 249.90 humidity 80.0 10 > th dose independent rect. 6 2
874 249.96 temperature 10.0 1440 > th dose independent rect. 21 9
877 249.96 temperature 30.0 1440 < th dose independent rect. 21 9
881 249.96 humidity 50.0 1440 > th dose independent rect. 21 9
887 249.96 atmosphere 995.0 1440 > th dose independent rect. 21 9
897 249.96 temperature 10.0 1440 > th dose independent rect. 6 15
915 250.05 atmosphere 1010.0 270 < th dose independent rect. 9 17
932 250.13 wind 9.0 270 < th dose independent rect. 6 22
949 250.22 precipitation 0.1 90 < th dose independent rect. 5 3
951 250.22 precipitation 0.1 90 < th dose dependent rect. 5 3
957 250.26 temperature 30.0 30 < th dose independent rect. 16 17
961 250.28 wind 1.0 270 > th dose dependent rect. 4 1