Os11g0444400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0444400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.8 | 0.481 | 8.21 | -0.951 | 2.43 | 1.29 | 0.655 | -4.19 | -0.511 | 4.92 | 24.1 | 1334 | -- | -- |
| 106.78 | 0.481 | 8.14 | -0.333 | 2.51 | 1.34 | 0.569 | -- | -0.532 | 4.85 | 17.13 | 10775 | -- | -- |
| 105.84 | 0.479 | 8.21 | -0.923 | 2.44 | 1.28 | -- | -4.05 | -0.505 | 4.88 | 24.11 | 1340 | -- | -- |
| 107.38 | 0.483 | 8.15 | -0.28 | 2.49 | 1.24 | -- | -- | -0.535 | 4.79 | 18.33 | 11474 | -- | -- |
| 408.98 | 0.942 | 8.24 | -0.956 | -- | 1.77 | -- | -4.25 | -0.502 | -- | 24 | 1251 | -- | -- |
| 141.15 | 0.557 | 8.04 | 0.517 | 2.53 | -- | 0.548 | -- | -0.0538 | 4.78 | -- | -- | -- | -- |
| 141.91 | 0.558 | 8.04 | 0.514 | 2.53 | -- | -- | -- | -0.0567 | 4.75 | -- | -- | -- | -- |
| 417.71 | 0.952 | 8.11 | 0.166 | -- | 1.33 | -- | -- | -0.214 | -- | 23.9 | 1261 | -- | -- |
| 108.17 | 0.484 | 8.13 | -- | 2.5 | 1.09 | -- | -- | -0.474 | 4.78 | 19.88 | 10240 | -- | -- |
| 481.53 | 1.03 | 8.06 | 0.61 | -- | -- | -- | -- | 0.00922 | -- | -- | -- | -- | -- |
| 148.87 | 0.571 | 8.05 | -- | 2.54 | -- | -- | -- | -0.114 | 4.74 | -- | -- | -- | -- |
| 418.39 | 0.953 | 8.12 | -- | -- | 1.37 | -- | -- | -0.236 | -- | 23.9 | 1264 | -- | -- |
| 491.34 | 1.03 | 8.08 | -- | -- | -- | -- | -- | -0.0584 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.27 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 20 |
| 2 | 100.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 20 |
| 3 | 100.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 13 |
| 23 | 102.56 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 29 | 102.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 46 | 103.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 17 |
| 53 | 103.66 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 59 | 103.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 60 | 103.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 8 |
| 111 | 104.09 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 122 | 104.14 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 301 | 105.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 330 | 105.70 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 335 | 105.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 378 | 105.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 411 | 106.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 416 | 106.03 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 440 | 106.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 14 |
| 488 | 106.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 569 | 106.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 571 | 106.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 21 |
| 590 | 107.08 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 598 | 107.12 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 599 | 107.12 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 602 | 107.16 | temperature | 20 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 654 | 107.34 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 672 | 107.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 4 |
| 728 | 107.55 | temperature | 20 | 270 | > th | dose dependent | sin | 9 | NA |
| 732 | 107.56 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 11 |
| 733 | 107.56 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 11 |
| 803 | 107.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 6 |
| 824 | 107.71 | temperature | 25 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 834 | 107.73 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 839 | 107.74 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 6 |
| 844 | 107.75 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 856 | 107.76 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 14 |
| 869 | 107.78 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 890 | 107.80 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 896 | 107.81 | temperature | 20 | 14400 | > th | dose dependent | sin | 17 | NA |
| 911 | 107.82 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 937 | 107.85 | temperature | 25 | 14400 | > th | dose independent | sin | 20 | NA |
| 938 | 107.85 | temperature | 25 | 14400 | < th | dose independent | sin | 20 | NA |
| 973 | 107.88 | temperature | 25 | 14400 | > th | dose dependent | rect. | 14 | 1 |