Os11g0442500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0442500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.95 | 0.488 | 7.6 | 0.00574 | 1.08 | 2.49 | -0.52 | -2.88 | -0.103 | 0.382 | 18.2 | 257 | -- | -- |
| 114.11 | 0.498 | 7.54 | 0.532 | 1.08 | 2.47 | -0.148 | -- | 0.0457 | 0.327 | 17.3 | 252 | -- | -- |
| 108.85 | 0.486 | 7.6 | 0.0776 | 1.05 | 2.5 | -- | -2.56 | -0.0868 | 0.455 | 18.03 | 278 | -- | -- |
| 114.21 | 0.498 | 7.54 | 0.536 | 1.08 | 2.48 | -- | -- | 0.0452 | 0.352 | 17.3 | 252 | -- | -- |
| 129.79 | 0.531 | 7.59 | -0.00707 | -- | 2.53 | -- | -2.29 | -0.121 | -- | 17.4 | 713 | -- | -- |
| 197.32 | 0.659 | 7.46 | 1.1 | 1.02 | -- | -0.412 | -- | 0.444 | 21.3 | -- | -- | -- | -- |
| 197.93 | 0.659 | 7.46 | 1.12 | 1.03 | -- | -- | -- | 0.445 | 21.3 | -- | -- | -- | -- |
| 135.99 | 0.543 | 7.53 | 0.435 | -- | 2.57 | -- | -- | 0.0121 | -- | 16.54 | 710 | -- | -- |
| 121.03 | 0.512 | 7.56 | -- | 1.13 | 2.72 | -- | -- | -0.0443 | 0.589 | 17.14 | 252 | -- | -- |
| 259.08 | 0.752 | 7.43 | 1.12 | -- | -- | -- | -- | 0.44 | -- | -- | -- | -- | -- |
| 230.93 | 0.711 | 7.49 | -- | 1.03 | -- | -- | -- | 0.32 | 21.3 | -- | -- | -- | -- |
| 140.61 | 0.552 | 7.54 | -- | -- | 2.74 | -- | -- | -0.0519 | -- | 16.3 | 717 | -- | -- |
| 292.37 | 0.798 | 7.46 | -- | -- | -- | -- | -- | 0.316 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.66 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 22 |
| 3 | 107.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 9 | 108.40 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 18 | 109.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 38 | 111.33 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 41 | 111.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 47 | 111.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 15 |
| 65 | 112.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 75 | 112.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 98 | 113.42 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 107 | 113.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 143 | 114.30 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 149 | 114.40 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 199 | 115.23 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 239 | 115.88 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 278 | 116.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 283 | 116.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 8 |
| 358 | 117.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 498 | 118.64 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 531 | 118.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 935 | 120.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |