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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0441900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.0213) R2 : 0.0018
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0407 (0.0449) R2dN8 : 0.00232 R2N8 : 0.0018
σ : 0.402
deviance : 74
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
65.66 0.377 2.85 0.211 0.148 0.72 0.537 2.32 0.0719 10.7 1015 10 -- --
67.51 0.383 2.85 0.186 0.144 1.01 0.41 -- 0.0734 11 1016 34 -- --
66.75 0.383 2.85 0.236 0.15 0.752 -- 2.14 0.0731 9.79 1015 28 -- --
68.11 0.384 2.86 0.218 0.144 1.05 -- -- 0.0548 9.94 1016 34 -- --
68.08 0.386 2.86 0.234 -- 0.683 -- 2.13 0.0725 -- 1015 28 -- --
70.75 0.394 2.85 0.246 0.127 -- 0.366 -- 0.0688 10.2 -- -- -- --
71.25 0.395 2.85 0.259 0.129 -- -- -- 0.069 9.43 -- -- -- --
69.45 0.388 2.86 0.249 -- 0.994 -- -- 0.0709 -- 1016 34 -- --
69.69 0.389 2.86 -- 0.154 1.11 -- -- 0.0505 9.75 1016 34 -- --
72.23 0.397 2.86 0.259 -- -- -- -- 0.0694 -- -- -- -- --
73.02 0.4 2.86 -- 0.129 -- -- -- 0.0401 9.28 -- -- -- --
71.08 0.393 2.86 -- -- 1.02 -- -- 0.05 -- 1016 34 -- --
74 0.402 2.86 -- -- -- -- -- 0.0407 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.46 atmosphere 1015 90 < th dose independent rect. 16 23
2 64.66 atmosphere 1015 10 < th dose independent rect. 16 23
4 64.86 atmosphere 1015 720 < th dose independent rect. 5 23
5 64.89 atmosphere 1015 720 < th dose independent rect. 16 9
7 64.93 atmosphere 1015 720 < th dose independent rect. 13 15
8 64.98 humidity 50 720 < th dose dependent rect. 13 1
11 65.07 atmosphere 1015 720 < th dose independent rect. 16 7
12 65.14 atmosphere 1015 720 < th dose independent rect. 16 23
13 65.16 atmosphere 1015 720 < th dose independent rect. 11 17
14 65.18 atmosphere 1015 720 < th dose independent rect. 20 8
15 65.20 atmosphere 1015 720 < th dose independent rect. 16 16
16 65.25 atmosphere 1015 270 < th dose independent rect. 16 12
22 65.40 humidity 90 90 > th dose independent rect. 9 2
24 65.41 atmosphere 1015 720 < th dose independent rect. 7 21
25 65.42 wind 3 10 < th dose dependent rect. 16 1
27 65.42 humidity 90 90 > th dose dependent rect. 9 2
28 65.43 atmosphere 1015 720 < th dose independent rect. 7 15
36 65.46 humidity 90 10 > th dose independent rect. 9 3
41 65.46 humidity 90 10 > th dose dependent rect. 9 3
48 65.50 atmosphere 1015 10 < th dose independent sin 8 NA
55 65.50 atmosphere 1015 10 < th dose independent sin 19 NA
99 65.53 atmosphere 1015 720 < th dose independent rect. 16 19
137 65.62 atmosphere 1015 270 < th dose independent sin 2 NA
165 65.65 atmosphere 1015 10 < th dose independent sin 1 NA
171 65.66 atmosphere 1015 10 > th dose independent sin 7 NA
267 65.66 atmosphere 1015 10 > th dose independent no NA NA
277 65.66 atmosphere 1015 10 < th dose independent no NA NA
281 65.66 atmosphere 1015 270 > th dose independent rect. 20 1
287 65.66 atmosphere 1015 10 > th dose independent rect. 23 1