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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0439100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glucose/ribitol dehydrogenase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.24 (0.0321) R2 : 0.328
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.03 (0.144) R2dE : 0.334 R2E : 0.328
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0239 (0.071) R2dN8 : 0.000207 R2N8 : -0.00545
σ : 0.593
deviance : 162.35
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.1
memory length : 420
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.87 0.581 4.19 0.7 0.000307 2.16 0.996 -0.993 0.156 6.14 25.1 420 -- --
153.88 0.578 4.22 0.541 0.0421 2.26 0.768 -- 0.104 5.99 24.64 441 -- --
154.35 0.579 4.21 0.608 0.126 2.21 -- -0.406 0.123 1 24.95 482 -- --
154.69 0.579 4.22 0.559 0.132 2.26 -- -- 0.114 0.947 24.85 487 -- --
154.98 0.58 4.21 0.64 -- 2.2 -- -0.532 0.139 -- 25.09 436 -- --
227.56 0.707 4.31 -0.0436 0.28 -- 0.663 -- -0.338 5.84 -- -- -- --
228.64 0.708 4.31 -0.0391 0.284 -- -- -- -0.341 5.74 -- -- -- --
155.34 0.58 4.22 0.55 -- 2.25 -- -- 0.115 -- 24.94 439 -- --
161.88 0.593 4.24 -- 0.128 2.02 -- -- 0.00902 1.19 25.01 478 -- --
232.82 0.713 4.32 -0.0302 -- -- -- -- -0.334 -- -- -- -- --
228.68 0.707 4.31 -- 0.283 -- -- -- -0.336 5.75 -- -- -- --
162.35 0.593 4.24 -- -- 2.03 -- -- 0.0239 -- 25.1 420 -- --
232.84 0.712 4.32 -- -- -- -- -- -0.331 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 152.45 temperature 10 720 > th dose dependent rect. 18 15
2 152.52 temperature 10 720 > th dose dependent sin 11 NA
11 153.65 temperature 25 270 < th dose dependent rect. 21 22
23 154.58 temperature 25 720 < th dose dependent rect. 16 20
25 154.66 temperature 30 720 < th dose dependent sin 11 NA
28 154.74 wind 9 43200 > th dose dependent rect. 18 12
101 156.63 wind 9 43200 > th dose dependent rect. 18 6
110 156.73 temperature 25 720 < th dose dependent rect. 6 23
115 156.88 wind 9 43200 > th dose dependent rect. 18 9
126 157.03 temperature 25 720 < th dose dependent no NA NA
131 157.10 temperature 25 720 < th dose dependent rect. 3 23
167 157.59 temperature 25 270 < th dose dependent rect. 21 14
239 158.37 temperature 15 720 > th dose dependent rect. 19 21
320 159.18 temperature 15 1440 > th dose dependent rect. 24 9
326 159.21 temperature 30 1440 < th dose dependent rect. 24 9
358 159.49 wind 9 43200 > th dose independent rect. 18 13
365 159.52 temperature 30 1440 < th dose dependent rect. 4 1
394 159.74 temperature 30 1440 < th dose dependent rect. 1 4
422 159.88 wind 9 43200 > th dose independent rect. 18 6
430 159.90 temperature 30 1440 < th dose dependent rect. 1 1
437 159.93 temperature 30 1440 < th dose dependent rect. 3 4
446 159.97 temperature 15 1440 > th dose dependent rect. 1 1
447 159.97 temperature 10 1440 > th dose dependent rect. 3 2
534 160.30 wind 9 43200 > th dose independent rect. 18 9
665 160.69 wind 9 43200 > th dose dependent rect. 18 4
947 161.63 wind 9 43200 < th dose independent rect. 18 6
993 161.83 wind 9 43200 < th dose independent rect. 18 13