Os11g0435900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0435900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 174.91 | 0.621 | 5.12 | -0.788 | 0.672 | -1.99 | 0.784 | -0.458 | -0.164 | 21.3 | 22.3 | 1364 | -- | -- |
| 175.46 | 0.617 | 5.14 | -0.936 | 0.657 | -1.98 | 0.759 | -- | -0.203 | 21.3 | 22.3 | 1362 | -- | -- |
| 176.72 | 0.619 | 5.12 | -0.772 | 0.651 | -1.99 | -- | -0.556 | -0.158 | 20.8 | 22.3 | 1288 | -- | -- |
| 177.48 | 0.62 | 5.14 | -0.961 | 0.643 | -1.98 | -- | -- | -0.198 | 20.8 | 22.34 | 1295 | -- | -- |
| 190.34 | 0.643 | 5.11 | -0.763 | -- | -1.96 | -- | -0.497 | -0.168 | -- | 22.3 | 877 | -- | -- |
| 331.77 | 0.854 | 4.98 | -0.253 | 0.715 | -- | 0.825 | -- | 0.483 | 22 | -- | -- | -- | -- |
| 334.32 | 0.856 | 4.98 | -0.284 | 0.716 | -- | -- | -- | 0.483 | 21.7 | -- | -- | -- | -- |
| 191 | 0.644 | 5.11 | -0.888 | -- | -1.91 | -- | -- | -0.175 | -- | 22.38 | 861 | -- | -- |
| 200.52 | 0.66 | 5.1 | -- | 0.64 | -1.75 | -- | -- | -0.0423 | 20.8 | 22.48 | 1282 | -- | -- |
| 364.81 | 0.892 | 4.96 | -0.277 | -- | -- | -- | -- | 0.482 | -- | -- | -- | -- | -- |
| 336.44 | 0.858 | 4.98 | -- | 0.715 | -- | -- | -- | 0.514 | 21.7 | -- | -- | -- | -- |
| 210.69 | 0.676 | 5.08 | -- | -- | -1.76 | -- | -- | -0.0303 | -- | 22.31 | 858 | -- | -- |
| 366.83 | 0.894 | 4.96 | -- | -- | -- | -- | -- | 0.513 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 183.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 18 |
| 19 | 184.77 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 37 | 185.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 87 | 186.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 10 |
| 91 | 186.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 10 |
| 104 | 186.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 13 |
| 179 | 187.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 183 | 187.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 185 | 187.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 197 | 187.38 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 220 | 187.48 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 5 |
| 222 | 187.49 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 225 | 187.51 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 5 |
| 230 | 187.52 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 233 | 187.55 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 242 | 187.60 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 253 | 187.66 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 259 | 187.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 280 | 187.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 307 | 188.02 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 3 |
| 308 | 188.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 6 |
| 321 | 188.09 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 348 | 188.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 357 | 188.26 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 359 | 188.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 4 |
| 415 | 188.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 735 | 190.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 836 | 190.49 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 839 | 190.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 929 | 190.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |