Os11g0435800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0435800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 315.27 | 0.834 | 6.14 | -2.59 | 0.0557 | 1.41 | -1.23 | 0.632 | 0.772 | 15 | 28.81 | 3670 | -- | -- |
| 315.35 | 0.827 | 6.12 | -2.45 | 0.0535 | 1.48 | -1.23 | -- | 0.8 | 15 | 28.84 | 3670 | -- | -- |
| 320.26 | 0.833 | 6.14 | -2.61 | 0.0519 | 1.4 | -- | 0.54 | 0.768 | 14.4 | 28.9 | 3641 | -- | -- |
| 320.28 | 0.834 | 6.12 | -2.49 | 0.0573 | 1.46 | -- | -- | 0.794 | 13.9 | 29 | 3651 | -- | -- |
| 320.43 | 0.834 | 6.13 | -2.57 | -- | 1.42 | -- | 0.406 | 0.773 | -- | 28.9 | 3669 | -- | -- |
| 378.94 | 0.913 | 6.13 | -2.84 | 0.192 | -- | -0.92 | -- | 0.738 | 14 | -- | -- | -- | -- |
| 381.69 | 0.915 | 6.13 | -2.87 | 0.206 | -- | -- | -- | 0.732 | 12.2 | -- | -- | -- | -- |
| 320.46 | 0.834 | 6.12 | -2.48 | -- | 1.47 | -- | -- | 0.791 | -- | 28.89 | 3669 | -- | -- |
| 450.43 | 0.988 | 6 | -- | 0.0566 | 2.28 | -- | -- | 1.36 | 14.3 | 25.14 | 4341 | -- | -- |
| 384.37 | 0.916 | 6.14 | -2.88 | -- | -- | -- | -- | 0.729 | -- | -- | -- | -- | -- |
| 599.11 | 1.14 | 6.06 | -- | 0.249 | -- | -- | -- | 1.05 | 12.8 | -- | -- | -- | -- |
| 334.18 | 0.851 | 5.88 | -- | -- | 2.43 | -- | -- | 1.85 | -- | 21.11 | 47520 | -- | -- |
| 602.99 | 1.15 | 6.07 | -- | -- | -- | -- | -- | 1.05 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 306.32 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 9 |
| 5 | 310.07 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 22 | 11 |
| 7 | 310.47 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 22 | 11 |
| 32 | 313.05 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 35 | 313.27 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 19 |
| 39 | 313.42 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 40 | 313.43 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 58 | 313.56 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 62 | 313.76 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 3 | 6 |
| 86 | 314.69 | radiation | 30.0 | 4320 | > th | dose independent | sin | 11 | NA |
| 101 | 315.20 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 108 | 315.46 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 119 | 315.80 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 19 | 15 |
| 129 | 316.03 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 136 | 316.14 | temperature | 25.0 | 4320 | > th | dose independent | sin | 9 | NA |
| 160 | 316.38 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 163 | 316.45 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 170 | 316.54 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 173 | 316.59 | temperature | 25.0 | 4320 | < th | dose independent | sin | 9 | NA |
| 185 | 316.71 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 9 | NA |
| 190 | 316.75 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 252 | 317.19 | radiation | 30.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 260 | 317.30 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 276 | 317.43 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 22 | 4 |
| 314 | 317.68 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 364 | 317.93 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 369 | 317.99 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 5 | 7 |
| 372 | 318.02 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 389 | 318.09 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 413 | 318.27 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 417 | 318.28 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 8 | 21 |
| 418 | 318.28 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 8 | 23 |
| 421 | 318.29 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 443 | 318.32 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 449 | 318.36 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 1 | 9 |
| 457 | 318.37 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 461 | 318.37 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 462 | 318.37 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 23 |
| 463 | 318.38 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 464 | 318.38 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 471 | 318.39 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 23 |
| 472 | 318.40 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 4 | 6 |
| 482 | 318.42 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 506 | 318.45 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 515 | 318.46 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 531 | 318.47 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 23 | 11 |
| 541 | 318.48 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 20 | 14 |
| 542 | 318.48 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 18 | 16 |
| 574 | 318.55 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 8 | 4 |
| 584 | 318.58 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 5 |
| 685 | 318.77 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 692 | 318.79 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 16 |
| 693 | 318.79 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 18 |
| 830 | 319.14 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 850 | 319.18 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 921 | 319.38 | radiation | 30.0 | 4320 | < th | dose independent | sin | 11 | NA |