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Os11g0433900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 60S ribosomal protein L38.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.9 (0.0231) R2 : 0.397
β1 : 1.06 (0.0845) R2dD : 0.216 R2D : 0.186
β2 : 0.731 (0.0602) R2dC : 0.196 R2C : 0.182
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.171 (0.0492) R2dN8 : 0.0214 R2N8 : -0.0098
σ : 0.434
deviance : 85.76
__
_____
C
peak time of C : 18.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
76.73 0.412 13.9 1.09 0.734 0.627 0.998 1.34 0.138 19.4 39.49 76 -- --
79.28 0.415 13.9 1.1 0.735 0.544 0.822 -- 0.141 19.1 40.02 70 -- --
79.24 0.415 13.9 1.1 0.727 0.598 -- 1.17 0.146 19.1 39.49 73 -- --
81.03 0.419 13.9 1.09 0.731 0.529 -- -- 0.145 19 40.09 70 -- --
98.05 0.461 13.9 1.08 -- 0.521 -- 1.12 0.0835 -- 37.8 767 -- --
84.33 0.431 13.9 1.07 0.727 -- 0.766 -- 0.168 18.4 -- -- -- --
85.76 0.434 13.9 1.06 0.731 -- -- -- 0.171 18.3 -- -- -- --
98.37 0.462 13.9 0.883 -- 0.534 -- -- 0.0507 -- 40.2 792 -- --
109.88 0.491 13.9 -- 0.727 0.417 -- -- 0.0592 19 40 69 -- --
113.46 0.498 13.9 1.04 -- -- -- -- 0.155 -- -- -- -- --
115.39 0.502 13.9 -- 0.716 -- -- -- 0.0531 18.3 -- -- -- --
123.21 0.517 13.9 -- -- 0.514 -- -- -0.00366 -- 30 746 -- --
142.02 0.556 13.9 -- -- -- -- -- 0.0399 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 71.09 atmosphere 1000.0 10 > th dose dependent rect. 3 6
2 71.21 temperature 10.0 90 > th dose dependent rect. 8 7
3 71.24 temperature 10.0 10 > th dose dependent rect. 9 6
6 71.35 atmosphere 1000.0 90 > th dose dependent rect. 3 5
14 71.71 temperature 15.0 270 > th dose dependent rect. 9 1
16 71.80 wind 5.0 90 < th dose independent rect. 3 5
21 71.99 temperature 10.0 43200 > th dose independent rect. 10 6
28 72.27 radiation 40.0 10 < th dose independent rect. 4 16
29 72.29 humidity 90.0 10 < th dose independent rect. 3 6
36 72.41 wind 5.0 270 < th dose independent rect. 4 1
40 72.43 temperature 15.0 270 > th dose dependent rect. 8 3
42 72.47 temperature 10.0 90 > th dose dependent rect. 3 5
44 72.52 atmosphere 1005.0 10 > th dose independent rect. 3 6
45 72.52 temperature 10.0 10 > th dose dependent rect. 3 6
55 72.61 atmosphere 1005.0 90 > th dose independent rect. 3 5
62 72.65 precipitation 0.1 90 < th dose independent rect. 8 19
64 72.65 precipitation 0.1 90 < th dose dependent rect. 8 19
65 72.66 radiation 30.0 90 < th dose independent rect. 3 6
70 72.73 atmosphere 1000.0 270 > th dose dependent rect. 3 2
73 72.76 temperature 30.0 90 < th dose independent rect. 3 6
75 72.77 precipitation 0.1 90 < th dose independent rect. 3 5
77 72.77 precipitation 0.1 90 < th dose dependent rect. 3 5
78 72.78 wind 1.0 30 > th dose independent rect. 9 6
84 72.84 radiation 1.0 10 > th dose independent rect. 9 6
89 72.89 temperature 10.0 10 > th dose independent rect. 9 6
91 72.89 atmosphere 995.0 10 > th dose independent rect. 9 6
92 72.89 atmosphere 1015.0 10 < th dose independent rect. 9 6
93 72.89 precipitation 0.1 10 < th dose independent rect. 9 6
94 72.89 temperature 10.0 10 > th dose independent rect. 15 18
95 72.89 precipitation 0.1 10 < th dose dependent rect. 9 6
99 72.94 temperature 10.0 90 > th dose independent rect. 3 5
102 72.94 humidity 50.0 90 > th dose independent rect. 3 5
104 72.94 atmosphere 995.0 90 > th dose independent rect. 3 5
105 72.94 atmosphere 1015.0 90 < th dose independent rect. 3 5
106 72.94 temperature 10.0 90 > th dose independent rect. 8 19
108 72.94 wind 9.0 90 < th dose dependent rect. 3 6
110 72.95 precipitation 0.1 90 < th dose independent rect. 8 7
112 72.95 precipitation 0.1 90 < th dose dependent rect. 8 7
113 72.98 precipitation 0.1 10 < th dose independent rect. 4 5
115 72.98 precipitation 0.1 10 < th dose dependent rect. 4 5
125 73.02 precipitation 0.1 10 < th dose independent rect. 9 19
126 73.02 precipitation 0.1 10 < th dose dependent rect. 9 19
129 73.03 temperature 10.0 10 > th dose dependent rect. 9 18
131 73.04 radiation 40.0 90 < th dose independent rect. 3 16
136 73.05 wind 9.0 10 < th dose dependent rect. 4 5
141 73.08 wind 9.0 10 < th dose independent rect. 15 18
146 73.09 temperature 10.0 10 > th dose independent rect. 4 5
148 73.09 temperature 30.0 10 < th dose independent rect. 4 5
149 73.09 humidity 50.0 10 > th dose independent rect. 4 5
151 73.09 atmosphere 995.0 10 > th dose independent rect. 4 5
153 73.09 atmosphere 1015.0 10 < th dose independent rect. 4 5
156 73.09 temperature 10.0 10 > th dose independent rect. 9 19
158 73.10 temperature 10.0 1440 > th dose independent rect. 10 6
164 73.10 temperature 10.0 1440 > th dose independent rect. 16 18
184 73.15 humidity 50.0 30 > th dose independent rect. 9 6
200 73.21 atmosphere 995.0 90 > th dose independent rect. 8 19
228 73.27 atmosphere 995.0 10 > th dose independent rect. 9 19
238 73.29 wind 9.0 270 < th dose dependent rect. 4 1
240 73.31 wind 9.0 90 < th dose independent rect. 8 19
242 73.32 atmosphere 1005.0 270 > th dose independent rect. 3 2
246 73.33 wind 9.0 10 < th dose independent rect. 9 6
265 73.37 precipitation 0.1 10 < th dose independent rect. 15 18
266 73.37 precipitation 0.1 10 < th dose dependent rect. 15 18
270 73.39 wind 1.0 270 > th dose independent rect. 3 2
283 73.39 radiation 40.0 90 < th dose independent rect. 14 18
287 73.40 humidity 50.0 30 > th dose independent rect. 9 19
308 73.45 precipitation 0.1 270 < th dose independent rect. 3 2
319 73.45 precipitation 0.1 270 < th dose dependent rect. 3 2
333 73.49 atmosphere 995.0 10 > th dose independent rect. 15 18
347 73.55 atmosphere 1015.0 10 < th dose independent rect. 15 18
350 73.56 radiation 40.0 10 < th dose independent rect. 15 18
353 73.57 wind 9.0 10 < th dose independent rect. 9 19
367 73.62 humidity 90.0 10 < th dose independent rect. 9 6
389 73.70 radiation 1.0 270 < th dose dependent rect. 4 1
403 73.79 temperature 10.0 270 > th dose independent rect. 4 1
405 73.79 temperature 30.0 270 < th dose independent rect. 4 1
406 73.79 humidity 50.0 270 > th dose independent rect. 4 1
409 73.79 atmosphere 995.0 270 > th dose independent rect. 4 1
410 73.79 atmosphere 1010.0 270 < th dose independent rect. 4 1
412 73.79 radiation 20.0 270 < th dose independent rect. 4 1
417 73.79 temperature 10.0 270 > th dose independent rect. 5 23
436 73.81 radiation 40.0 270 < th dose dependent rect. 4 1
457 73.89 radiation 1.0 270 < th dose independent rect. 3 2
464 73.91 humidity 50.0 270 > th dose independent rect. 9 1
476 73.93 precipitation 0.1 270 < th dose independent rect. 5 22
479 73.93 precipitation 0.1 270 < th dose dependent rect. 5 22
493 73.97 temperature 10.0 1440 > th dose independent rect. 4 6
496 73.97 atmosphere 995.0 1440 > th dose independent rect. 4 6
497 73.97 atmosphere 1015.0 1440 < th dose independent rect. 4 6
498 73.97 temperature 10.0 1440 > th dose independent rect. 10 18
515 74.04 temperature 10.0 270 > th dose independent rect. 9 1
516 74.04 atmosphere 995.0 270 > th dose independent rect. 9 1
517 74.04 atmosphere 1015.0 270 < th dose independent rect. 9 1
518 74.04 precipitation 0.1 270 < th dose independent rect. 9 1
520 74.04 temperature 10.0 270 > th dose independent rect. 10 23
521 74.04 precipitation 0.1 270 < th dose dependent rect. 9 1
527 74.06 wind 9.0 270 < th dose independent rect. 9 1
530 74.07 humidity 50.0 10 > th dose independent rect. 15 18
546 74.13 wind 1.0 270 > th dose independent rect. 9 1
551 74.13 temperature 10.0 270 > th dose dependent rect. 4 1
562 74.19 radiation 40.0 10 < th dose independent rect. 12 21
589 74.26 radiation 20.0 1440 < th dose dependent rect. 11 2
607 74.29 wind 9.0 270 < th dose independent rect. 10 23
611 74.30 humidity 70.0 90 > th dose independent rect. 3 8
616 74.31 radiation 10.0 270 < th dose independent rect. 17 10
627 74.33 radiation 1.0 270 > th dose independent rect. 9 1
636 74.36 wind 3.0 4320 > th dose independent rect. 8 1
655 74.40 wind 1.0 90 > th dose independent rect. 3 5
666 74.42 humidity 50.0 270 > th dose dependent rect. 4 1
693 74.44 radiation 40.0 270 < th dose dependent rect. 17 10
723 74.47 radiation 10.0 1440 < th dose dependent rect. 9 6
734 74.50 temperature 10.0 270 > th dose independent rect. 17 10
738 74.50 wind 9.0 270 < th dose independent rect. 3 14
739 74.50 temperature 10.0 270 > th dose independent rect. 3 14
740 74.50 atmosphere 1015.0 270 < th dose independent rect. 3 14
761 74.53 precipitation 0.1 270 < th dose independent rect. 3 14
764 74.53 precipitation 0.1 270 < th dose dependent rect. 3 14
765 74.54 wind 3.0 4320 < th dose independent rect. 8 1
766 74.54 atmosphere 1015.0 90 < th dose independent rect. 8 19
770 74.56 wind 9.0 270 < th dose independent rect. 5 22
782 74.59 wind 9.0 270 < th dose independent rect. 17 10
799 74.62 atmosphere 1000.0 30 > th dose independent rect. 20 8
800 74.62 atmosphere 1015.0 10 < th dose independent rect. 9 19
845 74.66 humidity 50.0 270 > th dose independent rect. 17 10
851 74.67 wind 9.0 90 < th dose dependent rect. 15 17
870 74.71 radiation 40.0 270 < th dose dependent rect. 2 5
886 74.75 precipitation 0.1 270 < th dose independent rect. 17 10
889 74.75 precipitation 0.1 270 < th dose dependent rect. 17 10
905 74.78 radiation 1.0 270 > th dose dependent rect. 9 1
928 74.82 precipitation 0.1 270 < th dose independent rect. 6 8
935 74.82 precipitation 0.1 270 < th dose dependent rect. 6 8
948 74.84 wind 1.0 270 > th dose independent rect. 1 6
954 74.84 temperature 10.0 10 > th dose dependent rect. 15 18
956 74.85 atmosphere 995.0 270 > th dose independent rect. 17 10
969 74.87 radiation 20.0 1440 < th dose independent rect. 11 2
987 74.88 wind 1.0 90 > th dose independent rect. 8 19