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Os11g0433600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.025) R2 : 0.914
β1 : 1.79 (0.0913) R2dD : 0.0743 R2D : 0.0584
β2 : 2.66 (0.068) R2dC : 0.347 R2C : -0.12
β3 : -3.7 (0.0564) R2dE : 0.975 R2E : 0.496
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.106 (0.0532) R2dN8 : 0.00109 R2N8 : -0.00573
σ : 0.466
deviance : 100.08
__
_____
C
peak time of C : 20.7
E
wheather : radiation
threshold : 44.98
memory length : 309
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15
open length of G : 14.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
96.47 0.461 10.2 1.81 2.65 -3.54 1.08 0.0597 0.11 20.5 43.57 295 15 14.8
96.42 0.457 10.2 1.81 2.66 -3.56 1.13 -- 0.103 20.5 42.87 297 15 14.8
98.97 0.463 10.2 1.79 2.69 -3.67 -- 0.506 0.109 20.7 41.88 299 15 14.7
100.08 0.466 10.2 1.79 2.66 -3.7 -- -- 0.106 20.7 44.98 309 15 14.7
164.63 0.598 10.2 1.84 -- -4.48 -- 0.429 0.0516 -- 59.72 611 15 15.2
154.17 0.582 10.2 1.76 4.13 -- 0.158 -- 0.0938 15.9 -- -- -- --
154.25 0.582 10.2 1.76 4.13 -- -- -- 0.0947 15.9 -- -- -- --
151.54 0.573 10.2 1.74 -- -4.2 -- -- 0.0327 -- 161.1 721 13.6 16
183.48 0.631 10.3 -- 2.64 -3.49 -- -- -0.0383 20.5 39.46 295 15 14.8
1089.34 1.54 10.2 1.59 -- -- -- -- -0.0155 -- -- -- -- --
236.18 0.719 10.2 -- 4.1 -- -- -- -0.102 15.9 -- -- -- --
231.64 0.709 10.2 -- -- -4.16 -- -- -0.154 -- 144.4 710 13.6 16.2
1156.31 1.59 10.2 -- -- -- -- -- -0.192 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 97.93 radiation 40.0 270 < th dose dependent rect. 15 15
5 100.14 radiation 20.0 270 < th dose independent rect. 15 15
6 100.20 temperature 15.0 270 > th dose independent rect. 1 21
9 101.50 temperature 15.0 270 > th dose independent rect. 24 23
10 101.79 wind 5.0 270 < th dose independent rect. 3 2
11 101.87 humidity 50.0 270 > th dose dependent rect. 21 4
13 101.94 temperature 15.0 270 > th dose independent rect. 16 14
14 102.24 wind 5.0 270 < th dose independent rect. 2 4
17 102.88 precipitation 0.1 270 < th dose independent rect. 3 2
18 102.88 precipitation 0.1 270 < th dose dependent rect. 3 2
23 103.42 wind 9.0 270 < th dose independent rect. 5 22
26 103.73 humidity 70.0 270 > th dose dependent rect. 23 1
31 104.12 wind 9.0 270 < th dose independent rect. 6 10
33 104.29 atmosphere 1015.0 270 < th dose independent rect. 1 20
38 104.40 temperature 15.0 270 > th dose independent rect. 11 10
40 104.43 precipitation 0.1 270 < th dose independent rect. 2 4
42 104.43 precipitation 0.1 270 < th dose dependent rect. 2 4
44 104.54 temperature 10.0 270 > th dose independent rect. 6 10
45 104.54 atmosphere 1015.0 270 < th dose independent rect. 6 10
48 104.61 precipitation 0.1 270 < th dose independent rect. 6 10
49 104.61 precipitation 0.1 270 < th dose dependent rect. 6 10
50 104.69 wind 5.0 270 < th dose independent rect. 1 6
51 104.73 temperature 15.0 270 > th dose independent rect. 5 22
53 104.76 temperature 10.0 270 > th dose independent rect. 3 2
55 104.76 temperature 30.0 270 < th dose independent rect. 3 2
56 104.76 humidity 50.0 270 > th dose independent rect. 3 2
59 104.76 atmosphere 995.0 270 > th dose independent rect. 3 2
60 104.76 atmosphere 1010.0 270 < th dose independent rect. 3 2
62 104.76 radiation 20.0 270 < th dose independent rect. 3 2
66 104.78 radiation 40.0 270 < th dose dependent rect. 3 2
68 104.80 radiation 1.0 270 < th dose dependent rect. 3 2
70 104.81 humidity 80.0 270 > th dose independent rect. 21 4
72 104.85 radiation 1.0 270 < th dose independent rect. 3 2
75 104.95 wind 9.0 270 < th dose independent rect. 6 20
77 104.99 radiation 10.0 270 < th dose dependent rect. 1 20
83 105.20 temperature 15.0 90 > th dose independent rect. 3 19
89 105.44 wind 9.0 270 < th dose dependent rect. 3 2
92 105.45 wind 9.0 270 < th dose independent rect. 21 4
96 105.50 temperature 10.0 270 > th dose independent rect. 21 4
97 105.50 temperature 30.0 270 < th dose independent rect. 21 4
98 105.50 humidity 50.0 270 > th dose independent rect. 21 4
101 105.50 atmosphere 995.0 270 > th dose independent rect. 21 4
102 105.50 radiation 1.0 270 < th dose independent rect. 21 4
108 105.50 radiation 1.0 270 < th dose dependent rect. 21 4
117 105.59 precipitation 0.1 270 < th dose independent rect. 6 20
118 105.59 precipitation 0.1 270 < th dose dependent rect. 6 20
119 105.64 atmosphere 1010.0 270 < th dose independent rect. 2 4
122 105.68 humidity 50.0 270 > th dose dependent rect. 20 6
123 105.69 precipitation 0.1 270 < th dose independent rect. 21 4
124 105.69 precipitation 0.1 270 < th dose dependent rect. 21 4
125 105.73 wind 9.0 270 < th dose independent rect. 16 14
131 105.89 radiation 20.0 90 < th dose independent rect. 3 6
133 105.92 temperature 10.0 270 > th dose independent rect. 2 4
135 105.92 temperature 30.0 270 < th dose independent rect. 2 4
136 105.92 humidity 50.0 270 > th dose independent rect. 2 4
139 105.92 atmosphere 995.0 270 > th dose independent rect. 2 4
141 105.92 radiation 20.0 270 < th dose independent rect. 2 4
144 105.92 atmosphere 1010.0 270 < th dose independent rect. 11 10
145 105.92 temperature 10.0 270 > th dose independent rect. 6 20
150 106.14 radiation 40.0 270 < th dose dependent rect. 2 4
151 106.16 atmosphere 995.0 270 > th dose dependent rect. 22 3
152 106.17 precipitation 0.1 270 < th dose independent rect. 5 22
153 106.17 precipitation 0.1 270 < th dose dependent rect. 5 22
155 106.21 radiation 20.0 270 < th dose dependent rect. 2 5
158 106.26 wind 9.0 270 < th dose dependent rect. 2 4
168 106.33 precipitation 0.1 270 < th dose independent rect. 1 20
169 106.33 precipitation 0.1 270 < th dose dependent rect. 1 20
176 106.56 radiation 30.0 270 < th dose dependent rect. 1 8
184 106.75 wind 9.0 270 < th dose dependent rect. 21 4
189 106.87 precipitation 0.1 270 < th dose independent rect. 16 14
190 106.87 precipitation 0.1 270 < th dose dependent rect. 16 14
195 107.04 precipitation 0.1 270 < th dose independent rect. 1 6
196 107.04 precipitation 0.1 270 < th dose dependent rect. 1 6
218 107.11 precipitation 0.1 90 < th dose independent rect. 8 19
220 107.11 precipitation 0.1 90 < th dose dependent rect. 8 19
241 107.19 radiation 1.0 270 < th dose independent rect. 2 17
243 107.22 atmosphere 995.0 270 > th dose independent rect. 16 14
249 107.28 wind 9.0 270 < th dose independent rect. 1 20
270 107.40 wind 9.0 90 < th dose independent rect. 8 19
272 107.40 atmosphere 1015.0 90 < th dose independent rect. 3 19
288 107.50 atmosphere 995.0 270 > th dose independent rect. 6 10
290 107.53 temperature 10.0 270 > th dose dependent rect. 3 3
294 107.62 humidity 80.0 270 > th dose independent rect. 23 1
323 107.82 temperature 10.0 90 > th dose independent rect. 8 19
334 107.96 humidity 50.0 270 > th dose independent rect. 17 13
336 107.98 wind 9.0 270 < th dose independent rect. 20 6
338 108.00 temperature 10.0 270 > th dose independent rect. 20 6
339 108.00 temperature 30.0 270 < th dose independent rect. 20 6
340 108.00 humidity 50.0 270 > th dose independent rect. 20 6
343 108.00 atmosphere 995.0 270 > th dose independent rect. 20 6
344 108.00 radiation 1.0 270 < th dose independent rect. 20 6
351 108.00 radiation 1.0 270 < th dose dependent rect. 20 6
371 108.18 humidity 70.0 270 > th dose independent rect. 1 6
374 108.21 precipitation 0.1 270 < th dose independent rect. 20 6
375 108.21 precipitation 0.1 270 < th dose dependent rect. 20 6
389 108.37 temperature 10.0 270 > th dose independent rect. 1 6
391 108.37 temperature 30.0 270 < th dose independent rect. 1 6
392 108.37 humidity 50.0 270 > th dose independent rect. 1 6
394 108.37 atmosphere 995.0 270 > th dose independent rect. 1 6
399 108.39 wind 9.0 90 < th dose independent rect. 3 19
402 108.41 atmosphere 995.0 270 > th dose independent rect. 1 20
435 108.45 precipitation 0.1 270 < th dose independent rect. 2 18
436 108.45 precipitation 0.1 270 < th dose dependent rect. 2 18
475 108.70 humidity 50.0 270 > th dose dependent rect. 3 2
478 108.71 radiation 40.0 90 < th dose dependent rect. 3 19
488 108.86 wind 9.0 270 < th dose independent rect. 23 1
489 108.86 temperature 10.0 270 > th dose independent rect. 23 1
490 108.86 temperature 30.0 270 < th dose independent rect. 23 1
491 108.86 humidity 50.0 270 > th dose independent rect. 23 1
494 108.86 atmosphere 995.0 270 > th dose independent rect. 23 1
495 108.86 radiation 1.0 270 < th dose independent rect. 23 1
501 108.86 radiation 1.0 270 < th dose dependent rect. 23 1
510 108.92 precipitation 0.1 10 < th dose independent rect. 4 18
512 108.92 precipitation 0.1 10 < th dose dependent rect. 4 18
515 108.94 atmosphere 995.0 90 > th dose independent rect. 3 19
520 109.05 precipitation 0.1 270 < th dose independent rect. 23 1
521 109.05 precipitation 0.1 270 < th dose dependent rect. 23 1
544 109.30 radiation 10.0 10 < th dose independent rect. 4 19
610 109.63 temperature 10.0 270 > th dose independent rect. 21 14
611 109.63 atmosphere 995.0 270 > th dose independent rect. 21 14
628 109.80 wind 9.0 270 < th dose dependent rect. 23 1
635 109.87 wind 9.0 270 < th dose independent rect. 21 14
656 110.04 wind 1.0 270 > th dose independent rect. 2 4
659 110.06 humidity 50.0 270 > th dose independent rect. 21 14
666 110.11 wind 5.0 10 < th dose independent rect. 4 4
752 110.46 radiation 40.0 90 < th dose independent rect. 3 19
766 110.50 temperature 30.0 90 < th dose dependent rect. 22 5
807 110.59 humidity 50.0 270 > th dose dependent rect. 2 4
812 110.63 wind 9.0 10 < th dose independent rect. 8 20
828 110.72 wind 1.0 270 > th dose independent rect. 3 2
832 110.75 precipitation 0.1 10 < th dose independent rect. 4 4
833 110.75 precipitation 0.1 10 < th dose dependent rect. 4 4
888 111.00 radiation 40.0 10 < th dose independent rect. 4 4
909 111.04 temperature 10.0 10 > th dose independent rect. 4 4
911 111.04 temperature 30.0 10 < th dose independent rect. 4 4
912 111.04 humidity 50.0 10 > th dose independent rect. 4 4
914 111.04 atmosphere 995.0 10 > th dose independent rect. 4 4
915 111.04 atmosphere 1015.0 10 < th dose independent rect. 4 4
917 111.04 temperature 10.0 10 > th dose independent rect. 8 20
923 111.07 atmosphere 1015.0 270 < th dose independent rect. 16 14
937 111.12 wind 9.0 10 < th dose dependent rect. 4 4
938 111.14 radiation 20.0 10 < th dose dependent rect. 4 19