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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0433300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TRAF-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.27 (0.0893) R2 : 0.826
β1 : -0.902 (0.644) R2dD : 0.00894 R2D : -0.526
β2 : 1.3 (0.134) R2dC : 0.0364 R2C : -0.366
β3 : -3.78 (0.437) R2dE : 0.203 R2E : -0.405
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 36 (3.37) R2dD*E : 0.669 R2D*E : -0.0665
γ1 : -3.74 (0.128) R2dN8 : 0.58 R2N8 : 0.352
σ : 0.973
deviance : 436.64
__
_____
C
peak time of C : 4.2
E
wheather : temperature
threshold : 29.76
memory length : 3998
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
436.23 0.981 7.27 -0.952 1.3 -3.78 0.602 36 -3.73 4.08 29.71 4063 -- --
543.31 1.09 6.51 5.26 1.26 -1.02 0.0922 -- -3.12 3.72 18.3 47520 -- --
436.64 0.973 7.27 -0.902 1.3 -3.78 -- 36 -3.74 4.2 29.76 3998 -- --
514.4 1.06 6.66 3.28 1.24 -2.33 -- -- -3.71 4.17 16.6 47520 -- --
525.93 1.07 7.24 -0.642 -- -3.78 -- 34.9 -3.68 -- 29.8 3906 -- --
558.84 1.11 6.49 5.51 1.2 -- 0.334 -- -3.04 3.89 -- -- -- --
559.16 1.11 6.49 5.5 1.2 -- -- -- -3.04 3.93 -- -- -- --
588.94 1.13 6.66 3.18 -- -2.37 -- -- -3.74 -- 16.91 47520 -- --
609.34 1.15 7.03 -- 1.18 -3.75 -- -- -4.46 4.23 18.6 47520 -- --
638.3 1.18 6.49 5.55 -- -- -- -- -3.01 -- -- -- -- --
1356.89 1.72 6.63 -- 1.31 -- -- -- -3.65 3.87 -- -- -- --
637.74 1.18 6.88 -- -- -4.52 -- -- -4.71 -- 18.45 47520 -- --
1451.1 1.78 6.63 -- -- -- -- -- -3.62 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 432.14 wind 1.0 14400 < th dose dependent rect. 2 1
2 446.33 temperature 30.0 4320 < th dose independent rect. 14 22
3 447.41 temperature 25.0 4320 > th dose dependent sin 9 NA
5 448.55 temperature 25.0 4320 > th dose dependent rect. 18 17
6 448.68 temperature 30.0 4320 > th dose independent rect. 14 22
41 453.47 temperature 30.0 4320 < th dose independent rect. 17 23
43 453.54 temperature 30.0 4320 < th dose independent rect. 20 20
48 453.60 temperature 30.0 4320 < th dose independent rect. 1 15
50 453.61 temperature 30.0 4320 < th dose independent rect. 22 18
53 453.65 temperature 30.0 4320 < th dose independent rect. 7 9
54 453.66 temperature 30.0 4320 < th dose independent rect. 4 12
83 455.12 temperature 30.0 4320 < th dose independent sin 3 NA
93 455.29 temperature 30.0 4320 > th dose independent rect. 8 8
116 455.36 wind 7.0 43200 > th dose independent rect. 18 5
123 455.60 temperature 30.0 4320 > th dose independent rect. 17 23
147 455.90 temperature 25.0 4320 > th dose independent rect. 6 2
158 455.98 temperature 30.0 4320 < th dose independent rect. 1 23
164 456.01 temperature 30.0 4320 < th dose independent rect. 7 23
166 456.02 temperature 30.0 4320 < th dose independent rect. 7 17
167 456.02 temperature 30.0 4320 < th dose independent rect. 9 21
170 456.03 temperature 30.0 4320 < th dose independent rect. 9 15
172 456.03 temperature 30.0 4320 < th dose independent rect. 4 20
184 456.05 temperature 30.0 4320 < th dose independent rect. 7 20
190 456.06 temperature 30.0 4320 < th dose independent rect. 9 18
194 456.06 temperature 30.0 4320 < th dose independent rect. 4 23
195 456.06 temperature 30.0 4320 < th dose independent rect. 22 23
196 456.07 temperature 30.0 4320 < th dose independent no NA NA
215 456.10 temperature 30.0 4320 < th dose independent rect. 9 12
291 456.83 wind 7.0 43200 < th dose independent rect. 18 5
293 456.85 temperature 25.0 4320 > th dose dependent no NA NA
294 456.85 temperature 25.0 4320 > th dose dependent rect. 5 23
301 456.92 wind 9.0 43200 > th dose dependent rect. 16 3
326 457.11 temperature 25.0 4320 > th dose dependent rect. 23 23
330 457.18 temperature 25.0 4320 > th dose dependent rect. 1 8
347 457.41 temperature 30.0 4320 > th dose independent sin 3 NA
365 457.69 temperature 25.0 4320 < th dose independent rect. 6 2
369 457.72 temperature 25.0 4320 > th dose dependent rect. 18 3
370 457.74 temperature 25.0 4320 > th dose dependent rect. 17 11
380 457.82 temperature 25.0 4320 > th dose dependent rect. 5 4
413 458.02 wind 9.0 43200 > th dose independent rect. 16 7
453 458.23 wind 7.0 43200 > th dose independent rect. 18 2
466 458.36 temperature 25.0 4320 > th dose dependent rect. 20 1
480 458.51 temperature 30.0 4320 > th dose independent no NA NA
589 458.54 temperature 25.0 4320 > th dose dependent rect. 13 15
625 458.93 humidity 90.0 14400 > th dose dependent rect. 3 2
646 459.16 wind 9.0 43200 > th dose independent rect. 16 14
669 459.55 wind 1.0 43200 < th dose independent rect. 22 4
733 460.06 wind 9.0 43200 < th dose independent rect. 16 6
764 460.39 temperature 30.0 4320 < th dose independent rect. 14 4
769 460.44 wind 1.0 43200 > th dose independent rect. 17 10
787 460.74 wind 1.0 43200 < th dose dependent rect. 16 11
792 460.80 temperature 30.0 4320 < th dose independent rect. 14 10
793 460.81 temperature 30.0 4320 < th dose independent rect. 14 16
803 460.86 wind 9.0 43200 > th dose independent rect. 16 10
806 460.88 temperature 30.0 4320 < th dose independent rect. 14 13
809 460.92 temperature 30.0 4320 < th dose independent rect. 14 7
822 460.98 wind 7.0 14400 > th dose dependent rect. 18 2
828 461.05 temperature 30.0 4320 < th dose independent sin 11 NA
829 461.07 precipitation 0.1 43200 < th dose independent rect. 8 1
830 461.07 precipitation 0.1 43200 < th dose dependent rect. 8 1
845 461.16 temperature 25.0 4320 > th dose dependent rect. 5 9
892 461.63 wind 1.0 43200 > th dose independent rect. 20 7
905 461.91 wind 1.0 43200 > th dose independent rect. 18 8
924 462.24 precipitation 0.1 43200 > th dose independent rect. 8 1
927 462.24 precipitation 0.1 43200 > th dose dependent rect. 8 1
939 462.33 temperature 30.0 4320 > th dose independent rect. 14 4
943 462.36 wind 1.0 43200 > th dose independent rect. 22 4
952 462.47 temperature 25.0 4320 > th dose independent sin 8 NA
968 462.75 wind 1.0 43200 < th dose independent rect. 17 9
975 462.93 wind 9.0 43200 < th dose independent rect. 16 10
994 463.00 wind 9.0 43200 < th dose independent rect. 16 13
999 463.07 wind 1.0 43200 < th dose independent rect. 20 6