Os11g0433100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os11g0433100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.24 | 0.548 | 3.97 | 1.24 | 2.13 | 0.979 | 1.53 | 0.932 | 0.468 | 18.7 | 25.25 | 241 | -- | -- |
| 136.37 | 0.544 | 3.98 | 1.13 | 2.13 | 1.08 | 1.59 | -- | 0.456 | 18.7 | 25.91 | 238 | -- | -- |
| 140.41 | 0.552 | 3.95 | 1.49 | 2.15 | 0.839 | -- | 2.72 | 0.478 | 18.6 | 23.32 | 261 | -- | -- |
| 142.66 | 0.556 | 3.98 | 1.1 | 2.12 | 1.16 | -- | -- | 0.473 | 18.6 | 26.1 | 253 | -- | -- |
| 282.99 | 0.783 | 4 | 0.917 | -- | 2.68 | -- | 0.776 | 0.179 | -- | 24.5 | 387 | -- | -- |
| 154.76 | 0.583 | 3.98 | 1.3 | 2.54 | -- | 2.07 | -- | 0.507 | 18.3 | -- | -- | -- | -- |
| 165.35 | 0.602 | 3.97 | 1.28 | 2.55 | -- | -- | -- | 0.514 | 18.3 | -- | -- | -- | -- |
| 281.21 | 0.781 | 3.98 | 0.774 | -- | 2.78 | -- | -- | 0.213 | -- | 24.5 | 384 | -- | -- |
| 173.06 | 0.613 | 4 | -- | 1.93 | 1.43 | -- | -- | 0.328 | 18.8 | 25.15 | 271 | -- | -- |
| 502.96 | 1.05 | 3.93 | 1.21 | -- | -- | -- | -- | 0.459 | -- | -- | -- | -- | -- |
| 208.36 | 0.675 | 4.01 | -- | 2.53 | -- | -- | -- | 0.372 | 18.3 | -- | -- | -- | -- |
| 295.69 | 0.801 | 4 | -- | -- | 2.87 | -- | -- | 0.12 | -- | 24.5 | 389 | -- | -- |
| 541.56 | 1.09 | 3.96 | -- | -- | -- | -- | -- | 0.325 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.29 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 7 |
| 3 | 127.03 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 9 |
| 4 | 127.38 | temperature | 30 | 90 | > th | dose dependent | rect. | 18 | 16 |
| 7 | 127.80 | temperature | 30 | 10 | > th | dose dependent | rect. | 17 | 18 |
| 10 | 127.89 | temperature | 30 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 24 | 127.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 8 |
| 26 | 127.99 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 1 |
| 42 | 128.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 120 | 128.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 14 |
| 189 | 129.59 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 210 | 129.77 | radiation | 40 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 215 | 130.10 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 5 | 7 |
| 225 | 130.24 | radiation | 20 | 270 | < th | dose independent | rect. | 7 | 16 |
| 237 | 130.51 | radiation | 30 | 270 | < th | dose independent | rect. | 18 | 17 |
| 250 | 130.78 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 251 | 130.82 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 5 | 7 |
| 257 | 130.96 | temperature | 25 | 10 | > th | dose independent | rect. | 13 | 7 |
| 269 | 131.09 | temperature | 15 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 291 | 131.41 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 6 | 5 |
| 302 | 131.54 | temperature | 30 | 90 | < th | dose independent | rect. | 8 | 17 |
| 304 | 131.55 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 311 | 131.67 | radiation | 40 | 270 | < th | dose dependent | rect. | 18 | 17 |
| 336 | 131.86 | temperature | 30 | 270 | < th | dose independent | rect. | 18 | 17 |
| 339 | 131.89 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 409 | 132.30 | radiation | 40 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 410 | 132.31 | temperature | 20 | 90 | > th | dose dependent | sin | 20 | NA |
| 415 | 132.34 | temperature | 20 | 270 | > th | dose dependent | sin | 22 | NA |
| 423 | 132.40 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 17 |
| 490 | 132.74 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 491 | 132.75 | radiation | 30 | 270 | < th | dose independent | rect. | 7 | 4 |
| 524 | 132.95 | radiation | 40 | 270 | < th | dose dependent | rect. | 6 | 6 |
| 528 | 133.01 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 531 | 133.02 | temperature | 10 | 90 | > th | dose dependent | sin | 20 | NA |
| 533 | 133.03 | radiation | 30 | 270 | < th | dose independent | rect. | 8 | 2 |
| 552 | 133.14 | temperature | 10 | 270 | > th | dose dependent | sin | 22 | NA |
| 585 | 133.20 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 15 |
| 587 | 133.20 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 17 |
| 611 | 133.27 | temperature | 10 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 662 | 133.50 | radiation | 30 | 270 | < th | dose independent | rect. | 6 | 6 |
| 783 | 133.87 | humidity | 70 | 270 | > th | dose independent | rect. | 18 | 17 |
| 815 | 133.99 | wind | 7 | 270 | < th | dose independent | rect. | 11 | 7 |
| 892 | 134.22 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 8 |
| 900 | 134.25 | radiation | 40 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 904 | 134.25 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 2 | 17 |
| 979 | 134.50 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 8 | 6 |