Os11g0429200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os11g0429200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.43 | 0.251 | 8.74 | 0.505 | 0.532 | 0.17 | -0.0819 | 2.19 | 0.274 | 8.21 | 19.73 | 3033 | -- | -- |
| 32.57 | 0.266 | 8.83 | -0.179 | 0.5 | 0.214 | -0.125 | -- | 0.0844 | 8.22 | 22.06 | 6717 | -- | -- |
| 28.43 | 0.248 | 8.74 | 0.517 | 0.531 | 0.153 | -- | 2.19 | 0.278 | 8.2 | 20.23 | 2993 | -- | -- |
| 30.42 | 0.257 | 8.82 | -0.168 | 0.597 | 0.369 | -- | -- | 0.102 | 8.3 | 25.45 | 1007 | -- | -- |
| 43.89 | 0.309 | 8.74 | 0.594 | -- | 0.102 | -- | 2.36 | 0.313 | -- | 21.13 | 2984 | -- | -- |
| 34.67 | 0.276 | 8.82 | -0.0401 | 0.538 | -- | -0.0592 | -- | 0.15 | 8.08 | -- | -- | -- | -- |
| 34.68 | 0.276 | 8.82 | -0.0418 | 0.538 | -- | -- | -- | 0.15 | 8.07 | -- | -- | -- | -- |
| 47.25 | 0.32 | 8.84 | -0.12 | -- | 0.276 | -- | -- | 0.123 | -- | 24.63 | 1401 | -- | -- |
| 30.86 | 0.259 | 8.81 | -- | 0.618 | 0.359 | -- | -- | 0.141 | 8.31 | 25.4 | 978 | -- | -- |
| 50.56 | 0.332 | 8.83 | -0.0369 | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
| 34.72 | 0.276 | 8.81 | -- | 0.538 | -- | -- | -- | 0.155 | 8.07 | -- | -- | -- | -- |
| 47.35 | 0.32 | 8.82 | -- | -- | 0.248 | -- | -- | 0.211 | -- | 29.5 | 1342 | -- | -- |
| 50.6 | 0.332 | 8.83 | -- | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 2 | 27.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 2 |
| 74 | 28.46 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 4 |
| 85 | 28.49 | temperature | 20 | 4320 | > th | dose dependent | sin | 16 | NA |
| 119 | 28.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 160 | 28.61 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 237 | 28.68 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 1 |
| 266 | 28.71 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 4 |
| 338 | 28.77 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 394 | 28.80 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 424 | 28.82 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 464 | 28.84 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 629 | 28.92 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 730 | 28.96 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 23 |
| 757 | 28.98 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 1 |
| 759 | 28.98 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 4 |
| 824 | 29.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 12 |
| 887 | 29.01 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 959 | 29.05 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 12 |
| 999 | 29.06 | radiation | 40 | 1440 | < th | dose dependent | rect. | 20 | 16 |