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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0427700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Xanthine/uracil/vitamin C permease family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.034) R2 : 0.0174
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.203 (0.0717) R2dN8 : 0.0224 R2N8 : 0.0174
σ : 0.641
deviance : 188.72
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.23 0.618 2.95 0.0209 0.149 1.06 0.0141 3.35 0.212 5.6 1015 10 -- --
178.42 0.622 2.95 0.0575 0.168 1.9 0.0562 -- 0.231 6.23 1016 11 -- --
176.23 0.623 2.95 0.0223 0.149 1.14 -- 3.54 0.212 5.63 1015 16 -- --
178.32 0.622 2.95 0.0305 0.149 1.98 -- -- 0.219 5.89 1016 11 -- --
177.39 0.624 2.96 0.027 -- 1.13 -- 3.51 0.216 -- 1015 37 -- --
187.11 0.641 2.96 0.0669 0.14 -- 0.343 -- 0.209 3.45 -- -- -- --
187.33 0.641 2.96 0.0609 0.155 -- -- -- 0.207 4.71 -- -- -- --
179.46 0.624 2.96 0.0354 -- 1.98 -- -- 0.224 -- 1016 11 -- --
178.34 0.622 2.95 -- 0.149 1.98 -- -- 0.216 5.87 1016 11 -- --
188.6 0.642 2.96 0.0667 -- -- -- -- 0.211 -- -- -- -- --
187.43 0.64 2.96 -- 0.156 -- -- -- 0.2 4.7 -- -- -- --
179.49 0.624 2.96 -- -- 1.98 -- -- 0.219 -- 1016 11 -- --
188.72 0.641 2.96 -- -- -- -- -- 0.203 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.30 atmosphere 1015.0 10 < th dose independent rect. 3 23
3 168.36 humidity 50.0 4320 < th dose dependent rect. 12 1
6 169.50 radiation 1.0 10 < th dose independent rect. 6 2
10 169.84 radiation 1.0 10 < th dose dependent rect. 6 2
14 170.75 radiation 1.0 10 < th dose independent rect. 7 7
15 170.75 precipitation 0.1 30 > th dose independent rect. 7 7
24 170.75 precipitation 0.1 30 > th dose dependent rect. 7 7
32 170.77 precipitation 0.1 90 > th dose independent rect. 7 1
35 170.77 precipitation 0.1 10 > th dose independent rect. 5 3
56 170.77 precipitation 0.1 90 > th dose dependent rect. 7 1
59 170.77 precipitation 0.1 10 > th dose dependent rect. 5 3
159 171.23 precipitation 0.1 10 > th dose independent rect. 7 1
196 171.23 precipitation 0.1 10 > th dose dependent rect. 7 1
242 171.50 humidity 50.0 4320 < th dose independent rect. 12 2
249 172.59 atmosphere 1015.0 30 < th dose independent rect. 21 23
250 172.67 atmosphere 1015.0 720 < th dose independent rect. 21 8
257 172.95 atmosphere 1015.0 720 < th dose independent rect. 23 16
261 173.24 wind 1.0 10 < th dose independent rect. 2 1
262 173.27 atmosphere 1015.0 720 < th dose independent rect. 17 16
266 173.68 wind 1.0 720 < th dose dependent rect. 24 1
270 173.91 atmosphere 1015.0 720 < th dose independent rect. 16 23
272 174.03 atmosphere 1015.0 720 < th dose independent rect. 8 16
273 174.14 wind 1.0 1440 < th dose dependent rect. 21 1
277 174.42 atmosphere 1015.0 720 < th dose independent rect. 17 8
278 174.42 atmosphere 1015.0 720 < th dose independent rect. 13 16
297 175.03 temperature 20.0 10 > th dose dependent rect. 2 1
307 175.20 wind 3.0 10 < th dose dependent rect. 2 1
309 175.28 temperature 20.0 10 > th dose independent rect. 2 1
311 175.29 humidity 90.0 30 > th dose dependent rect. 2 1
313 175.33 atmosphere 1015.0 720 < th dose independent rect. 2 23
314 175.39 humidity 90.0 10 > th dose independent rect. 2 1
319 175.47 temperature 25.0 10 < th dose independent rect. 2 1
322 175.51 atmosphere 1015.0 720 < th dose independent rect. 21 23
330 175.61 atmosphere 1015.0 720 < th dose independent rect. 21 17
334 175.68 atmosphere 1000.0 10 > th dose independent rect. 2 1
338 175.73 atmosphere 1015.0 30 < th dose dependent rect. 2 1
349 175.79 temperature 10.0 10 > th dose independent rect. 2 1
352 175.79 humidity 50.0 10 > th dose independent rect. 2 1
356 175.79 atmosphere 1010.0 10 < th dose independent rect. 2 1
358 175.79 radiation 1.0 10 < th dose independent rect. 2 1
363 175.79 precipitation 0.1 10 < th dose independent rect. 2 1
364 175.79 temperature 10.0 10 > th dose independent rect. 3 23
365 175.79 radiation 1.0 10 < th dose dependent rect. 2 1
370 175.79 precipitation 0.1 10 < th dose dependent rect. 2 1
376 175.83 wind 9.0 10 < th dose independent rect. 3 23
415 176.00 atmosphere 995.0 10 > th dose dependent rect. 2 1
435 176.09 atmosphere 1015.0 270 < th dose independent sin 7 NA
436 176.09 atmosphere 1015.0 10 < th dose independent sin 17 NA
437 176.09 atmosphere 1015.0 90 < th dose independent sin 18 NA
438 176.09 atmosphere 1015.0 10 < th dose independent sin 5 NA
460 176.15 temperature 30.0 30 < th dose dependent rect. 2 1
467 176.19 humidity 50.0 1440 < th dose independent rect. 9 1
500 176.19 humidity 50.0 1440 < th dose dependent rect. 9 1
534 176.20 atmosphere 1015.0 90 < th dose independent rect. 7 23
535 176.21 atmosphere 1015.0 720 < th dose independent sin 22 NA
543 176.23 atmosphere 1015.0 10 > th dose independent sin 7 NA
639 176.23 atmosphere 1015.0 10 > th dose independent no NA NA
645 176.23 atmosphere 1015.0 10 < th dose independent no NA NA
649 176.23 atmosphere 1015.0 270 > th dose independent rect. 20 1
655 176.23 atmosphere 1015.0 10 > th dose independent rect. 23 1