Os11g0427500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transposase (Fragment).
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Os11g0427500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transposase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.11 | 0.316 | 12 | -0.681 | 0.251 | 0.392 | 0.0675 | 1.71 | 0.157 | 21.7 | 37.66 | 629 | -- | -- |
| 50.05 | 0.329 | 12 | -0.59 | 0.287 | 0.529 | -0.342 | -- | 0.207 | 20.3 | 37.01 | 613 | -- | -- |
| 45.13 | 0.313 | 12 | -0.682 | 0.252 | 0.393 | -- | 1.7 | 0.157 | 21.7 | 37.66 | 628 | -- | -- |
| 49.58 | 0.328 | 12 | -0.564 | 0.232 | 0.53 | -- | -- | 0.206 | 21 | 40 | 565 | -- | -- |
| 47.61 | 0.321 | 12 | -0.666 | -- | 0.404 | -- | 1.84 | 0.145 | -- | 37.07 | 498 | -- | -- |
| 53.92 | 0.344 | 12 | -0.604 | 0.25 | -- | 0.737 | -- | 0.134 | 3.19 | -- | -- | -- | -- |
| 55.33 | 0.348 | 12 | -0.619 | 0.258 | -- | -- | -- | 0.13 | 2.01 | -- | -- | -- | -- |
| 51.83 | 0.335 | 12 | -0.574 | -- | 0.522 | -- | -- | 0.205 | -- | 40.02 | 453 | -- | -- |
| 57.3 | 0.353 | 12 | -- | 0.298 | 0.564 | -- | -- | 0.254 | 20.8 | 40.02 | 646 | -- | -- |
| 59.33 | 0.36 | 12 | -0.608 | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
| 65.42 | 0.378 | 12 | -- | 0.247 | -- | -- | -- | 0.199 | 1.94 | -- | -- | -- | -- |
| 60.21 | 0.361 | 12 | -- | -- | 0.511 | -- | -- | 0.247 | -- | 40 | 518 | -- | -- |
| 69.09 | 0.388 | 12 | -- | -- | -- | -- | -- | 0.204 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.70 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 21 |
| 2 | 43.91 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 19 |
| 9 | 44.45 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 22 |
| 11 | 44.53 | humidity | 70 | 270 | > th | dose independent | rect. | 7 | 20 |
| 34 | 45.02 | radiation | 20 | 720 | < th | dose independent | rect. | 23 | 10 |
| 38 | 45.05 | radiation | 40 | 720 | < th | dose independent | rect. | 15 | 20 |
| 40 | 45.12 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 10 |
| 45 | 45.19 | radiation | 40 | 720 | < th | dose independent | rect. | 7 | 20 |
| 48 | 45.21 | radiation | 40 | 720 | < th | dose independent | rect. | 13 | 23 |
| 49 | 45.23 | radiation | 40 | 720 | < th | dose independent | rect. | 23 | 12 |
| 53 | 45.24 | radiation | 40 | 720 | < th | dose independent | rect. | 6 | 22 |
| 58 | 45.34 | radiation | 10 | 4320 | < th | dose dependent | rect. | 6 | 4 |
| 59 | 45.35 | humidity | 70 | 270 | > th | dose independent | sin | 19 | NA |
| 60 | 45.35 | radiation | 40 | 720 | < th | dose independent | rect. | 7 | 14 |
| 61 | 45.35 | radiation | 20 | 720 | < th | dose independent | rect. | 16 | 18 |
| 74 | 45.42 | radiation | 10 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 78 | 45.47 | radiation | 40 | 720 | < th | dose independent | rect. | 7 | 12 |
| 79 | 45.52 | radiation | 40 | 720 | < th | dose independent | rect. | 9 | 10 |
| 82 | 45.53 | radiation | 40 | 720 | > th | dose independent | sin | 12 | NA |
| 94 | 45.58 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 7 |
| 97 | 45.58 | radiation | 10 | 4320 | < th | dose dependent | rect. | 22 | 12 |
| 105 | 45.59 | humidity | 90 | 270 | < th | dose dependent | rect. | 11 | 9 |
| 108 | 45.62 | radiation | 40 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 125 | 45.65 | humidity | 80 | 90 | < th | dose independent | rect. | 12 | 8 |
| 126 | 45.66 | humidity | 70 | 270 | < th | dose independent | rect. | 11 | 20 |
| 129 | 45.67 | radiation | 40 | 720 | < th | dose independent | rect. | 21 | 15 |
| 130 | 45.67 | radiation | 20 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 148 | 45.70 | humidity | 70 | 270 | < th | dose independent | sin | 19 | NA |
| 154 | 45.71 | radiation | 40 | 720 | < th | dose independent | sin | 9 | NA |
| 157 | 45.71 | radiation | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 159 | 45.71 | radiation | 10 | 720 | > th | dose dependent | rect. | 6 | 9 |
| 199 | 45.76 | radiation | 20 | 720 | < th | dose independent | rect. | 7 | 2 |
| 272 | 45.81 | humidity | 70 | 720 | < th | dose independent | rect. | 9 | 6 |
| 297 | 45.84 | radiation | 20 | 720 | > th | dose dependent | no | NA | NA |
| 417 | 45.87 | radiation | 40 | 720 | < th | dose independent | rect. | 7 | 4 |
| 445 | 45.90 | radiation | 20 | 720 | > th | dose dependent | sin | 12 | NA |
| 449 | 45.91 | radiation | 40 | 720 | > th | dose independent | rect. | 13 | 22 |
| 528 | 45.95 | radiation | 40 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 604 | 45.99 | radiation | 40 | 720 | > th | dose independent | rect. | 11 | 23 |
| 650 | 46.01 | radiation | 40 | 720 | < th | dose independent | no | NA | NA |
| 689 | 46.05 | temperature | 30 | 270 | < th | dose independent | sin | 22 | NA |
| 698 | 46.06 | radiation | 40 | 720 | > th | dose independent | sin | 5 | NA |
| 859 | 46.08 | radiation | 40 | 720 | < th | dose dependent | rect. | 15 | 20 |
| 863 | 46.09 | radiation | 40 | 720 | > th | dose independent | no | NA | NA |
| 864 | 46.09 | radiation | 40 | 720 | > th | dose independent | rect. | 8 | 7 |