Os11g0426400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os11g0426400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 267.56 | 0.769 | 4.38 | 0.583 | 0.766 | -0.754 | -0.798 | 3.4 | -1.04 | 2.36 | 26.38 | 476 | -- | -- |
| 276.76 | 0.775 | 4.34 | 0.773 | 0.787 | -0.673 | 0.304 | -- | -0.95 | 2.84 | 29.13 | 440 | -- | -- |
| 268.97 | 0.764 | 4.37 | 0.653 | 0.831 | -0.832 | -- | 2.68 | -1.05 | 2.71 | 26.67 | 479 | -- | -- |
| 276.6 | 0.775 | 4.35 | 0.719 | 0.78 | -0.67 | -- | -- | -0.987 | 2.62 | 39.9 | 460 | -- | -- |
| 291.73 | 0.795 | 4.36 | 0.577 | -- | -0.17 | -- | 2.51 | -1.01 | -- | 24.48 | 535 | -- | -- |
| 285.01 | 0.791 | 4.35 | 0.752 | 0.486 | -- | -0.00893 | -- | -0.927 | 1.26 | -- | -- | -- | -- |
| 285.01 | 0.791 | 4.35 | 0.752 | 0.487 | -- | -- | -- | -0.927 | 1.27 | -- | -- | -- | -- |
| 293.45 | 0.798 | 4.35 | 0.711 | -- | -0.423 | -- | -- | -0.973 | -- | 29.99 | 1199 | -- | -- |
| 290.77 | 0.794 | 4.38 | -- | 0.782 | -0.686 | -- | -- | -1.07 | 2.64 | 39.22 | 480 | -- | -- |
| 299.63 | 0.809 | 4.34 | 0.771 | -- | -- | -- | -- | -0.917 | -- | -- | -- | -- | -- |
| 299.92 | 0.81 | 4.36 | -- | 0.499 | -- | -- | -- | -1.01 | 1.33 | -- | -- | -- | -- |
| 306.39 | 0.815 | 4.39 | -- | -- | -0.491 | -- | -- | -1.1 | -- | 33.42 | 1216 | -- | -- |
| 315.31 | 0.829 | 4.36 | -- | -- | -- | -- | -- | -1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 263.27 | radiation | 40.0 | 90 | < th | dose independent | rect. | 8 | 5 |
| 2 | 263.30 | radiation | 1.0 | 270 | > th | dose dependent | sin | 17 | NA |
| 5 | 263.80 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 16 | 263.87 | radiation | 20.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 30 | 263.89 | radiation | 10.0 | 270 | > th | dose dependent | rect. | 12 | 5 |
| 46 | 263.97 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 13 | 7 |
| 64 | 264.10 | radiation | 20.0 | 270 | > th | dose independent | sin | 16 | NA |
| 80 | 264.19 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 13 | 15 |
| 92 | 264.38 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 13 | 10 |
| 124 | 264.81 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 131 | 264.91 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 13 | 13 |
| 134 | 264.98 | radiation | 40.0 | 270 | < th | dose independent | rect. | 8 | 2 |
| 136 | 265.00 | radiation | 30.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 177 | 265.27 | radiation | 20.0 | 90 | < th | dose independent | rect. | 8 | 5 |
| 179 | 265.28 | temperature | 25.0 | 10 | > th | dose independent | rect. | 13 | 6 |
| 186 | 265.40 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 8 |
| 201 | 265.60 | radiation | 30.0 | 270 | > th | dose independent | rect. | 12 | 2 |
| 202 | 265.60 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 9 |
| 203 | 265.60 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 8 | 5 |
| 208 | 265.66 | radiation | 1.0 | 90 | > th | dose independent | rect. | 12 | 7 |
| 220 | 265.75 | radiation | 20.0 | 270 | > th | dose dependent | rect. | 12 | 2 |
| 259 | 266.03 | humidity | 90.0 | 10 | < th | dose independent | rect. | 8 | 5 |
| 289 | 266.07 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 13 | 6 |
| 308 | 266.16 | temperature | 30.0 | 10 | < th | dose independent | rect. | 13 | 15 |
| 311 | 266.21 | radiation | 40.0 | 270 | < th | dose independent | rect. | 8 | 15 |
| 314 | 266.23 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 4 | 1 |
| 363 | 266.33 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 373 | 266.39 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 427 | 266.62 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 17 |
| 464 | 266.79 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 4 |
| 467 | 266.81 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 5 |
| 468 | 266.81 | wind | 1.0 | 10 | > th | dose independent | rect. | 13 | 19 |
| 470 | 266.83 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 7 | 2 |
| 493 | 266.97 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 521 | 267.09 | humidity | 80.0 | 10 | < th | dose independent | rect. | 1 | 12 |
| 544 | 267.20 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 574 | 267.35 | wind | 9.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 577 | 267.38 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 8 | 5 |
| 584 | 267.41 | humidity | 50.0 | 10 | > th | dose independent | rect. | 8 | 5 |
| 586 | 267.41 | wind | 1.0 | 10 | > th | dose independent | rect. | 13 | 15 |
| 587 | 267.42 | wind | 9.0 | 30 | < th | dose independent | rect. | 13 | 19 |
| 589 | 267.44 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 22 | 9 |
| 598 | 267.48 | humidity | 90.0 | 270 | < th | dose independent | rect. | 4 | 8 |
| 628 | 267.57 | radiation | 20.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 637 | 267.60 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 24 | 7 |
| 639 | 267.60 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 13 | 7 |
| 640 | 267.61 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 2 |
| 648 | 267.63 | atmosphere | 1005.0 | 720 | > th | dose independent | sin | 10 | NA |
| 650 | 267.63 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 19 | 14 |
| 664 | 267.66 | wind | 5.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 669 | 267.68 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 8 | 5 |
| 712 | 267.79 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 13 | 19 |
| 729 | 267.79 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 13 | 19 |
| 758 | 267.85 | wind | 1.0 | 30 | > th | dose independent | rect. | 8 | 5 |
| 759 | 267.85 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 762 | 267.85 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 764 | 267.85 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 794 | 267.89 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 8 | 5 |
| 795 | 267.89 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 5 |
| 810 | 267.89 | temperature | 10.0 | 30 | > th | dose independent | rect. | 13 | 19 |
| 813 | 267.89 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 5 |
| 839 | 267.94 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 4 | 9 |
| 860 | 267.97 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 12 | 2 |
| 934 | 268.07 | radiation | 10.0 | 30 | > th | dose independent | rect. | 6 | 7 |
| 958 | 268.11 | radiation | 1.0 | 30 | > th | dose independent | rect. | 8 | 5 |
| 971 | 268.14 | humidity | 60.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 983 | 268.16 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 20 | 17 |
| 984 | 268.16 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 990 | 268.18 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 1 |
| 998 | 268.19 | radiation | 40.0 | 270 | < th | dose independent | rect. | 17 | 20 |