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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0426000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0227) R2 : 0.381
β1 : -0.817 (0.0886) R2dD : 0.15 R2D : -0.0241
β2 : -- (--) R2dC : -- R2C : --
β3 : 16.8 (1.16) R2dE : 4.38 R2E : -4.06
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -97.7 (6.8) R2dD*E : 4.38 R2D*E : -4.13
γ1 : 0.13 (0.0481) R2dN8 : 0.0143 R2N8 : 0.037
σ : 0.405
deviance : 75.59
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.03
memory length : 92
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.04
open length of G : 2.93

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.73 0.403 3.04 -0.833 0.127 16.8 -0.687 -98 0.124 18 25.02 91 1.05 2.9
103.74 0.474 3 -0.115 0.157 1.36 0.0156 -- 0.147 16 23.87 116 0.983 5.23
74.87 0.403 3.04 -0.825 0.121 16.8 -- -97.5 0.125 17.9 25.03 92 1.06 2.93
99.59 0.465 2.98 -0.179 0.135 1.69 -- -- 0.19 16.1 24.15 149 0.517 5.08
75.59 0.405 3.04 -0.817 -- 16.8 -- -97.7 0.13 -- 25.03 92 1.04 2.93
109.74 0.491 2.94 -0.256 0.0976 -- -0.219 -- 0.322 23.4 -- -- -- --
109.89 0.491 2.94 -0.249 0.103 -- -- -- 0.322 0.667 -- -- -- --
100.27 0.466 2.97 -0.214 -- 1.64 -- -- 0.196 -- 24.2 155 0.417 5.1
101.13 0.468 2.98 -- 0.134 1.67 -- -- 0.174 17.1 24.2 150 0.516 5.05
110.56 0.491 2.94 -0.245 -- -- -- -- 0.324 -- -- -- -- --
111.52 0.494 2.94 -- 0.0995 -- -- -- 0.35 0.548 -- -- -- --
101.8 0.47 2.96 -- -- 1.59 -- -- 0.226 -- 24.2 153 0.45 4.98
112.14 0.494 2.93 -- -- -- -- -- 0.351 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 74.53 temperature 25.0 90 > th dose dependent rect. 1 3
2 74.74 radiation 1.0 14400 < th dose dependent rect. 3 1
3 75.14 wind 1.0 30 < th dose independent rect. 2 1
5 75.27 wind 1.0 30 < th dose dependent rect. 2 1
6 75.31 temperature 20.0 10 > th dose dependent rect. 2 1
17 75.46 temperature 20.0 30 > th dose independent rect. 2 1
19 75.49 wind 9.0 1440 < th dose independent rect. 3 1
20 75.49 temperature 10.0 1440 > th dose independent rect. 3 1
23 75.49 temperature 30.0 1440 < th dose independent rect. 3 1
27 75.49 humidity 50.0 1440 > th dose independent rect. 3 1
36 75.49 atmosphere 995.0 1440 > th dose independent rect. 3 1
37 75.49 radiation 1.0 1440 < th dose independent rect. 3 1
57 75.49 temperature 10.0 1440 > th dose independent rect. 4 23
62 75.49 radiation 1.0 1440 < th dose dependent rect. 3 1
71 75.54 humidity 90.0 30 > th dose independent rect. 2 1
75 75.58 atmosphere 1005.0 30 > th dose independent rect. 2 1
79 75.65 humidity 80.0 30 > th dose dependent rect. 2 1
81 75.68 atmosphere 1000.0 30 > th dose dependent rect. 2 1
90 75.75 temperature 10.0 30 > th dose independent rect. 2 1
92 75.75 temperature 30.0 30 < th dose independent rect. 2 1
93 75.75 humidity 50.0 30 > th dose independent rect. 2 1
97 75.75 atmosphere 1010.0 30 < th dose independent rect. 2 1
99 75.75 radiation 1.0 30 < th dose independent rect. 2 1
104 75.75 precipitation 0.1 30 < th dose independent rect. 2 1
105 75.75 temperature 10.0 30 > th dose independent rect. 3 23
106 75.75 radiation 1.0 30 < th dose dependent rect. 2 1
111 75.75 precipitation 0.1 30 < th dose dependent rect. 2 1
115 75.92 atmosphere 1015.0 30 < th dose dependent rect. 2 1
119 76.00 atmosphere 995.0 30 > th dose independent rect. 3 23
121 76.05 temperature 25.0 90 > th dose independent rect. 1 3
129 76.41 temperature 30.0 30 < th dose dependent rect. 2 1
167 77.08 wind 1.0 30 > th dose independent rect. 2 1
170 77.11 precipitation 0.1 30 < th dose independent rect. 3 23
171 77.11 precipitation 0.1 30 < th dose dependent rect. 3 23
181 78.93 wind 9.0 30 < th dose independent rect. 3 23
191 83.38 humidity 50.0 30 > th dose independent rect. 3 23
242 88.04 atmosphere 1015.0 30 < th dose independent rect. 3 23
323 91.70 wind 1.0 10 > th dose independent sin 16 NA
351 92.74 wind 1.0 30 < th dose dependent rect. 17 10
353 92.75 wind 1.0 30 < th dose dependent rect. 22 5
376 93.11 temperature 30.0 30 < th dose independent rect. 3 23
388 93.36 wind 1.0 30 < th dose dependent rect. 14 13
400 93.81 wind 1.0 30 > th dose independent rect. 3 23
412 94.27 wind 1.0 30 < th dose dependent rect. 10 17
428 94.87 humidity 90.0 90 < th dose independent rect. 2 1
487 95.94 wind 1.0 10 < th dose independent sin 16 NA
535 97.02 temperature 25.0 1440 < th dose independent rect. 1 1
550 97.19 wind 1.0 10 > th dose independent rect. 5 23
552 97.22 wind 9.0 30 < th dose dependent rect. 3 23
567 97.55 wind 1.0 10 > th dose independent no NA NA
591 97.89 temperature 10.0 30 > th dose dependent rect. 3 23
627 98.55 humidity 50.0 30 > th dose dependent rect. 3 23
629 98.57 wind 1.0 10 > th dose independent rect. 18 13
694 99.06 wind 1.0 30 > th dose dependent rect. 2 1
697 99.09 wind 9.0 720 < th dose independent rect. 15 12
704 99.23 temperature 10.0 720 > th dose independent rect. 3 12
705 99.23 temperature 10.0 720 > th dose independent rect. 15 12
707 99.25 precipitation 0.1 720 < th dose independent rect. 15 12
709 99.25 precipitation 0.1 720 < th dose dependent rect. 15 12
721 99.41 atmosphere 1015.0 1440 < th dose independent rect. 3 1
738 99.54 atmosphere 995.0 720 > th dose independent rect. 3 12
760 99.71 humidity 50.0 720 > th dose independent rect. 3 12
777 99.84 humidity 90.0 90 < th dose independent rect. 1 4
785 99.92 temperature 25.0 10 < th dose independent rect. 24 3
821 100.04 radiation 40.0 720 < th dose independent rect. 15 12
827 100.09 wind 1.0 10 > th dose independent rect. 17 23
830 100.10 precipitation 0.1 720 < th dose independent rect. 3 12
832 100.10 precipitation 0.1 720 < th dose dependent rect. 3 12
835 100.13 humidity 80.0 720 > th dose independent rect. 3 3
837 100.16 wind 1.0 10 > th dose independent rect. 23 23
838 100.17 humidity 90.0 270 < th dose independent rect. 23 4
839 100.17 wind 1.0 10 > th dose independent rect. 11 23
869 100.36 atmosphere 995.0 720 > th dose independent rect. 15 12
984 100.54 atmosphere 1015.0 720 < th dose independent rect. 3 12