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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0425900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.041) R2 : 0.0193
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.259 (0.0864) R2dN8 : 0.0249 R2N8 : 0.0193
σ : 0.773
deviance : 274.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
261.39 0.76 3.07 0.0647 0.161 0.611 0.144 1.21 0.3 21.9 19.6 147 -- --
264.9 0.758 3.04 0.223 0.197 0.466 0.273 -- 0.356 22.7 20 300 -- --
261.46 0.753 3.07 0.0593 0.157 0.613 -- 1.24 0.3 22.2 19.6 145 -- --
265.2 0.758 3.05 0.201 0.193 0.445 -- -- 0.344 22.7 20 300 -- --
262.98 0.755 3.07 0.0623 -- 0.627 -- 1.22 0.302 -- 19.58 140 -- --
270.87 0.772 3.06 0.0667 0.215 -- 0.216 -- 0.264 23.8 -- -- -- --
271.07 0.771 3.06 0.058 0.214 -- -- -- 0.263 23.8 -- -- -- --
267.13 0.761 3.04 0.205 -- 0.496 -- -- 0.335 -- 19.8 189 -- --
266.29 0.76 3.05 -- 0.199 0.438 -- -- 0.332 22.9 20.07 299 -- --
273.96 0.773 3.06 0.0644 -- -- -- -- 0.266 -- -- -- -- --
271.16 0.77 3.06 -- 0.215 -- -- -- 0.257 23.9 -- -- -- --
268.04 0.763 3.05 -- -- 0.411 -- -- 0.314 -- 20.03 191 -- --
274.07 0.773 3.06 -- -- -- -- -- 0.259 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 254.06 humidity 80.0 10 < th dose independent rect. 22 2
3 254.10 humidity 80.0 90 < th dose dependent rect. 22 1
4 254.10 humidity 80.0 10 < th dose dependent rect. 22 2
11 254.27 humidity 80.0 270 < th dose independent rect. 24 1
12 254.27 humidity 80.0 10 < th dose independent rect. 24 4
16 254.27 humidity 80.0 270 < th dose dependent rect. 24 1
18 254.28 humidity 80.0 10 < th dose dependent rect. 24 4
53 257.58 temperature 25.0 10 < th dose dependent rect. 14 1
84 260.64 temperature 25.0 720 < th dose dependent rect. 12 1
85 260.70 atmosphere 1005.0 90 < th dose dependent rect. 8 1
88 260.74 atmosphere 1005.0 10 < th dose dependent rect. 10 1
98 260.87 temperature 20.0 270 > th dose independent rect. 16 15
102 260.93 temperature 25.0 10 < th dose independent rect. 13 1
117 261.03 radiation 1.0 10 < th dose independent rect. 11 3
136 261.03 radiation 1.0 10 < th dose dependent rect. 11 3
152 261.04 radiation 1.0 10 < th dose independent rect. 13 1
164 261.04 radiation 1.0 10 < th dose dependent rect. 13 1
191 261.56 temperature 20.0 90 > th dose independent rect. 19 13
193 261.66 humidity 90.0 4320 < th dose independent rect. 2 4
194 261.75 temperature 15.0 1440 > th dose independent rect. 23 1
198 261.82 temperature 20.0 270 < th dose independent sin 15 NA
199 261.83 temperature 20.0 270 < th dose independent rect. 9 20
202 261.89 humidity 90.0 4320 < th dose independent rect. 2 2
203 261.90 temperature 20.0 720 < th dose dependent rect. 12 11
206 261.95 temperature 20.0 720 > th dose independent rect. 19 2
213 262.02 temperature 20.0 720 < th dose dependent rect. 16 7
216 262.05 humidity 90.0 4320 < th dose independent rect. 23 7
219 262.06 temperature 20.0 720 > th dose independent rect. 14 8
220 262.07 temperature 20.0 270 < th dose independent rect. 19 10
238 262.27 temperature 30.0 10 < th dose dependent rect. 22 21
242 262.30 temperature 20.0 270 > th dose independent sin 15 NA
246 262.32 humidity 90.0 4320 < th dose dependent rect. 5 2
251 262.35 temperature 20.0 720 > th dose independent rect. 9 13
255 262.37 temperature 30.0 10 < th dose dependent rect. 22 17
257 262.39 temperature 30.0 10 < th dose dependent rect. 22 19
266 262.42 temperature 20.0 90 > th dose independent rect. 23 23
271 262.44 humidity 90.0 4320 > th dose independent rect. 23 7
273 262.45 radiation 40.0 4320 < th dose dependent rect. 23 1
283 262.49 wind 9.0 1440 < th dose independent rect. 23 1
287 262.49 temperature 30.0 1440 < th dose independent rect. 23 1
291 262.49 humidity 50.0 1440 > th dose independent rect. 23 1
301 262.49 atmosphere 995.0 1440 > th dose independent rect. 23 1
302 262.49 radiation 1.0 1440 < th dose independent rect. 23 1
323 262.49 temperature 10.0 1440 > th dose independent rect. 24 23
326 262.49 radiation 1.0 1440 < th dose dependent rect. 23 1
333 262.50 humidity 90.0 4320 < th dose independent rect. 23 16
342 262.54 atmosphere 1005.0 30 > th dose dependent rect. 22 1
352 262.59 temperature 20.0 720 > th dose independent rect. 16 6
357 262.61 humidity 80.0 4320 > th dose dependent rect. 3 3
359 262.62 temperature 25.0 14400 < th dose independent rect. 3 1
362 262.63 atmosphere 1005.0 30 > th dose independent rect. 22 1
366 262.65 temperature 25.0 30 > th dose independent rect. 22 1
373 262.66 temperature 20.0 720 < th dose dependent rect. 21 2
382 262.68 humidity 60.0 4320 > th dose dependent rect. 3 4
400 262.72 wind 1.0 30 > th dose dependent rect. 22 1
411 262.75 temperature 20.0 270 < th dose independent rect. 19 19
436 262.81 precipitation 0.1 30 < th dose independent rect. 22 1
440 262.81 precipitation 0.1 30 < th dose dependent rect. 22 1
441 262.81 temperature 20.0 10 < th dose dependent rect. 23 10
451 262.84 temperature 20.0 270 > th dose independent rect. 10 23
463 262.86 atmosphere 1005.0 30 > th dose dependent rect. 13 1
470 262.87 humidity 90.0 4320 > th dose independent rect. 23 16
475 262.88 temperature 20.0 30 > th dose dependent rect. 22 1
482 262.90 temperature 20.0 270 < th dose independent rect. 19 6
496 262.93 wind 1.0 30 > th dose independent rect. 22 1
514 262.97 temperature 20.0 720 > th dose independent rect. 10 11
516 262.97 temperature 20.0 270 < th dose independent rect. 2 23
521 262.99 wind 5.0 30 < th dose independent rect. 22 1
524 262.99 humidity 80.0 4320 > th dose dependent rect. 3 1
527 262.99 temperature 20.0 270 < th dose dependent rect. 19 9
531 263.00 temperature 10.0 30 > th dose independent rect. 22 1
533 263.00 temperature 30.0 30 < th dose independent rect. 22 1
534 263.00 humidity 50.0 30 > th dose independent rect. 22 1
538 263.00 atmosphere 1010.0 30 < th dose independent rect. 22 1
540 263.00 radiation 1.0 30 < th dose independent rect. 22 1
551 263.00 temperature 10.0 30 > th dose independent rect. 23 23
552 263.00 radiation 1.0 30 < th dose dependent rect. 22 1
565 263.01 temperature 20.0 270 > th dose independent rect. 13 23
569 263.02 temperature 25.0 14400 > th dose independent rect. 3 1
629 263.09 temperature 20.0 720 < th dose independent rect. 16 7
634 263.09 humidity 70.0 4320 > th dose dependent rect. 23 1
646 263.11 wind 9.0 30 < th dose dependent rect. 22 1
660 263.13 temperature 20.0 270 < th dose independent rect. 14 10
666 263.13 humidity 50.0 30 > th dose dependent rect. 22 1
674 263.14 humidity 80.0 4320 > th dose dependent rect. 23 7
692 263.16 temperature 20.0 10 < th dose dependent sin 8 NA
720 263.20 temperature 20.0 270 < th dose dependent sin 16 NA
728 263.22 temperature 20.0 270 < th dose independent no NA NA
738 263.23 wind 5.0 14400 > th dose dependent rect. 15 1
741 263.24 temperature 20.0 90 < th dose independent rect. 22 16
742 263.24 temperature 20.0 270 < th dose independent rect. 13 23
743 263.24 atmosphere 995.0 30 > th dose independent rect. 23 23
746 263.24 temperature 25.0 14400 > th dose dependent rect. 24 1
765 263.26 humidity 80.0 4320 > th dose dependent rect. 23 18
772 263.28 temperature 20.0 30 > th dose independent rect. 3 19
779 263.29 temperature 20.0 90 < th dose independent rect. 22 10
783 263.30 wind 7.0 14400 < th dose independent rect. 15 1
794 263.31 temperature 20.0 270 > th dose independent rect. 3 23
811 263.33 humidity 90.0 4320 > th dose independent rect. 23 1
814 263.33 wind 9.0 30 < th dose independent rect. 23 23
819 263.33 temperature 20.0 270 < th dose dependent rect. 11 17
838 263.35 temperature 20.0 270 < th dose dependent rect. 13 15
848 263.37 wind 5.0 14400 > th dose independent rect. 15 1
855 263.37 temperature 20.0 90 < th dose independent rect. 22 21
881 263.39 temperature 20.0 270 > th dose independent rect. 16 23
882 263.39 humidity 50.0 4320 > th dose dependent rect. 23 7
929 263.45 temperature 20.0 270 > th dose independent no NA NA
951 263.47 temperature 10.0 10 > th dose dependent rect. 4 18
957 263.48 temperature 30.0 30 < th dose dependent rect. 22 1
965 263.49 temperature 20.0 720 > th dose independent rect. 6 16