Os11g0424700 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0424700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.44	(0.0482)	R²	:	0.0746
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	5.35	(0.888)	R²_dE	:	0.0738	R²_E	:	0.0727
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0852	(0.101)	R²_dN8	:	0.00185	R²_N8	:	0.000813
σ	:	0.905
deviance	:	377.36
__

_____

C
peak time of C	:	--
E
wheather	:	radiation
threshold	:	40
memory length	:	82
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	15
open length of G	:	12

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
359.32	0.883	3.47	-0.602	0.0859	12.1	0.488	16.8	0.0194	8.96	40	90	15	1
368.47	0.894	3.44	-0.565	0.103	5.85	0.719	--	0.00867	11.1	40	92	15	10.6
359.98	0.884	3.47	-0.58	0.0946	12.6	--	17.8	0.021	11.2	40.07	82	15	1.05
367.56	0.893	3.46	-0.576	0.101	5.15	--	--	0.0179	11.9	40	76	15	10.4
360.54	0.884	3.47	-0.582	--	12.7	--	17.9	0.0204	--	40.07	85	15	1.92
394.19	0.931	3.46	-0.684	0.0223	--	-0.703	--	-0.00563	18.8	--	--	--	--
394.4	0.93	3.46	-0.668	0.133	--	--	--	-0.00504	13.5	--	--	--	--
368.19	0.894	3.46	-0.582	--	5.11	--	--	0.0151	--	40	75	15	11.5
376.64	0.904	3.44	--	0.108	5.31	--	--	0.087	12.1	40	90	15	10.4
395.47	0.929	3.46	-0.673	--	--	--	--	-0.00791	--	--	--	--	--
406.15	0.943	3.44	--	0.145	--	--	--	0.0693	13.7	--	--	--	--
377.36	0.905	3.44	--	--	5.35	--	--	0.0852	--	40	82	15	12
407.42	0.942	3.45	--	--	--	--	--	0.0668	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	359.32	radiation	40.0	90	> th	dose independent	rect.	15	1
18	359.32	radiation	40.0	90	> th	dose dependent	rect.	15	1
35	368.15	radiation	20.0	90	> th	dose independent	rect.	6	1
49	368.15	radiation	20.0	90	> th	dose dependent	rect.	6	1
63	368.35	wind	5.0	90	> th	dose independent	rect.	5	2
64	368.37	wind	5.0	90	> th	dose dependent	rect.	5	2
71	369.06	temperature	25.0	4320	< th	dose independent	rect.	2	2
74	369.19	humidity	80.0	14400	< th	dose independent	rect.	23	3
75	369.24	humidity	80.0	90	< th	dose dependent	rect.	7	1
76	369.28	humidity	80.0	14400	> th	dose independent	rect.	23	3
77	369.30	humidity	80.0	14400	> th	dose independent	rect.	24	1
79	369.32	humidity	80.0	14400	< th	dose independent	rect.	23	5
81	369.36	humidity	80.0	14400	< th	dose dependent	rect.	23	2
86	369.59	humidity	80.0	14400	< th	dose dependent	rect.	22	6
88	369.66	humidity	80.0	14400	> th	dose independent	rect.	23	5
109	369.90	wind	1.0	720	< th	dose dependent	rect.	13	10
112	369.93	humidity	80.0	14400	< th	dose dependent	rect.	2	2
131	370.25	wind	1.0	720	< th	dose independent	rect.	13	10
132	370.25	humidity	80.0	30	< th	dose dependent	rect.	3	5
140	370.31	radiation	10.0	14400	> th	dose independent	rect.	10	1
152	370.50	precipitation	0.1	43200	> th	dose dependent	rect.	20	12
163	370.66	wind	3.0	43200	> th	dose independent	rect.	1	2
184	371.15	humidity	80.0	14400	< th	dose independent	rect.	5	1
187	371.17	precipitation	0.1	43200	> th	dose dependent	rect.	20	17
189	371.20	humidity	80.0	14400	< th	dose dependent	rect.	5	1
191	371.21	radiation	40.0	4320	> th	dose independent	rect.	15	1
209	371.23	humidity	80.0	14400	> th	dose independent	rect.	3	3
210	371.25	humidity	80.0	14400	> th	dose independent	rect.	5	1
212	371.33	atmosphere	995.0	43200	< th	dose independent	rect.	14	9
215	371.37	wind	7.0	1440	< th	dose dependent	rect.	13	1
225	371.54	precipitation	0.1	43200	< th	dose independent	rect.	20	12
226	371.54	precipitation	0.1	43200	< th	dose dependent	rect.	20	12
230	371.60	wind	3.0	43200	< th	dose independent	rect.	1	1
233	371.61	precipitation	0.1	43200	> th	dose independent	rect.	20	12
243	371.76	precipitation	0.1	43200	< th	dose independent	rect.	17	15
245	371.76	precipitation	0.1	43200	< th	dose dependent	rect.	17	15
248	371.79	precipitation	0.1	43200	> th	dose dependent	rect.	17	15
249	371.80	precipitation	0.1	43200	> th	dose independent	rect.	17	15
250	371.80	precipitation	0.1	43200	< th	dose independent	rect.	20	17
251	371.80	precipitation	0.1	43200	< th	dose dependent	rect.	20	17
258	371.84	precipitation	0.1	43200	> th	dose independent	rect.	20	17
259	371.85	atmosphere	995.0	43200	> th	dose independent	rect.	13	10
260	371.87	precipitation	0.1	43200	> th	dose dependent	rect.	23	19
264	371.91	precipitation	0.1	43200	> th	dose dependent	rect.	1	17
267	371.99	precipitation	0.1	43200	< th	dose independent	rect.	20	19
268	371.99	precipitation	0.1	43200	< th	dose dependent	rect.	20	19
270	372.03	precipitation	0.1	43200	> th	dose independent	rect.	20	19
304	372.41	precipitation	0.1	43200	< th	dose independent	sin	10	NA
305	372.41	radiation	20.0	14400	> th	dose independent	rect.	13	1
306	372.41	precipitation	0.1	43200	< th	dose dependent	sin	10	NA
311	372.44	precipitation	0.1	43200	> th	dose independent	sin	10	NA
315	372.46	precipitation	0.1	43200	> th	dose dependent	sin	9	NA
325	372.56	radiation	30.0	10	> th	dose dependent	rect.	15	1
353	372.74	radiation	20.0	14400	> th	dose independent	rect.	9	5
356	372.76	radiation	20.0	10	< th	dose independent	rect.	7	1
410	372.95	atmosphere	995.0	43200	< th	dose independent	rect.	13	11
453	372.99	wind	9.0	43200	> th	dose independent	rect.	13	1
454	372.99	atmosphere	1000.0	43200	> th	dose independent	rect.	7	1
457	373.00	wind	1.0	1440	> th	dose dependent	rect.	13	1
470	373.06	atmosphere	1000.0	43200	< th	dose independent	rect.	6	1
481	373.11	radiation	10.0	43200	< th	dose dependent	rect.	10	2
485	373.15	wind	9.0	43200	< th	dose independent	rect.	13	1
499	373.25	wind	1.0	720	> th	dose independent	rect.	11	9
585	373.37	precipitation	0.1	43200	> th	dose independent	rect.	1	3
613	373.45	atmosphere	1000.0	43200	< th	dose independent	rect.	6	6
632	373.49	wind	7.0	4320	> th	dose dependent	rect.	16	1
647	373.54	temperature	20.0	30	> th	dose independent	rect.	7	1
653	373.56	radiation	10.0	14400	> th	dose independent	rect.	6	8
689	373.64	atmosphere	1000.0	43200	> th	dose independent	rect.	9	1
690	373.64	precipitation	0.1	43200	< th	dose independent	rect.	1	3
692	373.64	precipitation	0.1	43200	< th	dose dependent	rect.	1	3
705	373.68	atmosphere	995.0	43200	> th	dose independent	sin	18	NA
740	373.75	precipitation	0.1	43200	> th	dose dependent	rect.	1	3
769	373.85	wind	9.0	43200	> th	dose dependent	rect.	13	2
770	373.85	atmosphere	995.0	43200	< th	dose dependent	rect.	15	7
819	373.97	wind	1.0	1440	> th	dose independent	rect.	10	11
830	374.02	atmosphere	995.0	43200	< th	dose independent	rect.	15	7
836	374.05	atmosphere	1000.0	43200	< th	dose independent	rect.	11	1
839	374.06	precipitation	0.1	43200	> th	dose independent	rect.	1	20
843	374.10	radiation	10.0	14400	> th	dose independent	sin	3	NA
849	374.11	wind	1.0	1440	> th	dose dependent	rect.	13	3
852	374.12	precipitation	0.1	43200	< th	dose independent	rect.	1	20
854	374.12	precipitation	0.1	43200	< th	dose dependent	rect.	1	20
860	374.14	atmosphere	1000.0	43200	> th	dose independent	rect.	11	1
896	374.21	wind	3.0	1440	< th	dose dependent	rect.	10	4
899	374.23	wind	3.0	43200	> th	dose independent	rect.	23	4
921	374.26	radiation	10.0	14400	> th	dose independent	rect.	9	23
935	374.30	wind	3.0	1440	> th	dose independent	rect.	12	2
950	374.34	precipitation	0.1	43200	> th	dose dependent	rect.	5	15