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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0420200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0244) R2 : 0.000739
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0299 (0.0514) R2dN8 : 0.000954 R2N8 : 0.000739
σ : 0.46
deviance : 97.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
91.77 0.45 2.86 0.0737 0.09 -0.276 -0.305 1.13 0.0921 6.64 10.01 1429 -- --
94.26 0.452 2.87 -0.0368 0.142 -0.231 -0.375 -- 0.071 6.93 10.59 1427 -- --
91.98 0.447 2.86 0.0594 0.0895 -0.268 -- 1.11 0.0853 6.22 10.5 1425 -- --
94.05 0.452 2.88 -0.106 0.12 -0.295 -- -- 0.0547 6.24 10.01 1440 -- --
92.4 0.448 2.86 0.0633 -- -0.268 -- 1.14 0.0901 -- 10.57 1416 -- --
95.52 0.458 2.91 -0.184 0.0901 -- -0.312 -- -0.0533 6.69 -- -- -- --
95.76 0.458 2.91 -0.19 0.0903 -- -- -- -0.0526 6.18 -- -- -- --
94.18 0.452 2.89 -0.129 -- -0.331 -- -- 0.0135 -- 10.57 2141 -- --
94.19 0.452 2.89 -- 0.0988 -0.288 -- -- 0.037 5.35 10 1425 -- --
96.18 0.458 2.91 -0.187 -- -- -- -- -0.0506 -- -- -- -- --
96.71 0.46 2.9 -- 0.0876 -- -- -- -0.0315 6.3 -- -- -- --
94.6 0.453 2.9 -- -- -0.341 -- -- 0.0224 -- 10 2139 -- --
97.1 0.46 2.9 -- -- -- -- -- -0.0299 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.74 radiation 30 10 > th dose independent rect. 15 1
17 85.55 radiation 1 1440 < th dose independent rect. 11 1
18 85.55 radiation 1 1440 < th dose dependent rect. 11 1
19 85.92 atmosphere 1005 720 < th dose independent rect. 22 1
22 86.13 wind 7 90 > th dose independent rect. 14 2
23 86.48 radiation 1 4320 < th dose dependent rect. 12 4
24 86.57 wind 7 90 > th dose dependent rect. 14 1
26 86.68 radiation 1 1440 < th dose independent rect. 13 2
29 86.69 radiation 1 1440 > th dose independent rect. 10 5
36 86.76 radiation 1 1440 > th dose independent rect. 13 2
38 86.78 atmosphere 1005 10 < th dose dependent rect. 23 12
41 86.81 radiation 30 10 > th dose dependent rect. 15 1
149 87.62 atmosphere 1005 10 < th dose dependent rect. 18 17
187 88.14 wind 7 90 > th dose dependent rect. 14 3
192 88.25 radiation 20 1440 < th dose dependent rect. 11 2
195 88.33 humidity 70 14400 < th dose dependent rect. 21 10
246 88.64 wind 7 10 > th dose dependent rect. 16 1
248 88.66 wind 1 720 < th dose independent rect. 23 1
321 89.02 wind 7 10 > th dose dependent rect. 15 3
330 89.09 atmosphere 1000 90 < th dose independent rect. 14 1
333 89.09 humidity 70 14400 < th dose independent rect. 21 10
342 89.10 humidity 70 14400 < th dose dependent rect. 6 1
357 89.17 atmosphere 1005 90 < th dose dependent rect. 7 3
358 89.18 humidity 70 14400 < th dose dependent rect. 21 1
371 89.24 humidity 80 10 > th dose independent rect. 10 1
373 89.25 wind 7 90 > th dose independent rect. 14 20
380 89.30 humidity 80 10 > th dose dependent rect. 10 1
398 89.44 wind 7 90 > th dose independent rect. 14 10
400 89.45 humidity 60 14400 < th dose independent rect. 6 1
402 89.45 humidity 60 14400 < th dose independent rect. 20 1
404 89.45 radiation 20 14400 > th dose independent rect. 17 1
459 89.45 radiation 20 14400 > th dose dependent rect. 17 1
537 89.58 wind 3 720 > th dose independent rect. 22 1
550 89.62 wind 7 43200 > th dose independent rect. 5 1
557 89.64 atmosphere 1005 270 < th dose dependent rect. 6 1
562 89.65 atmosphere 1005 10 < th dose independent rect. 23 12
589 89.73 wind 7 90 > th dose independent rect. 14 15
601 89.79 humidity 80 10 > th dose dependent rect. 8 3
603 89.81 humidity 60 14400 > th dose independent rect. 7 1
636 89.89 wind 7 43200 < th dose independent rect. 5 1
657 89.95 humidity 80 90 > th dose dependent rect. 8 2
679 90.05 wind 7 10 > th dose dependent rect. 15 19
720 90.15 wind 7 90 > th dose dependent rect. 14 20
723 90.16 humidity 90 720 > th dose dependent rect. 22 1
728 90.17 atmosphere 1005 10 < th dose dependent sin 9 NA
742 90.20 wind 7 43200 > th dose dependent rect. 13 1
759 90.24 wind 1 43200 > th dose independent rect. 16 1
786 90.29 radiation 10 14400 < th dose independent rect. 18 6
808 90.34 wind 1 43200 < th dose independent rect. 20 1
810 90.34 humidity 90 720 > th dose dependent rect. 20 4
816 90.36 wind 1 43200 > th dose independent rect. 20 1
817 90.36 wind 1 43200 < th dose independent rect. 16 1
828 90.38 humidity 60 14400 > th dose independent rect. 20 12
830 90.38 wind 1 43200 < th dose dependent rect. 15 2
836 90.40 radiation 1 43200 > th dose independent rect. 8 1
841 90.41 radiation 1 43200 < th dose dependent rect. 8 1
844 90.42 radiation 1 14400 < th dose independent rect. 4 1
845 90.42 radiation 1 43200 < th dose independent rect. 8 1
854 90.43 wind 9 43200 < th dose independent rect. 12 2
856 90.43 wind 1 43200 < th dose dependent rect. 20 1
865 90.45 radiation 10 14400 < th dose dependent rect. 4 1
866 90.45 wind 7 10 > th dose dependent rect. 12 6
867 90.46 wind 9 43200 > th dose independent rect. 12 2
883 90.50 temperature 15 43200 < th dose independent rect. 11 1
908 90.55 wind 9 43200 > th dose dependent rect. 12 4
910 90.55 wind 7 90 > th dose dependent rect. 14 10
912 90.56 humidity 60 14400 > th dose independent rect. 4 4
924 90.58 atmosphere 1005 720 > th dose independent rect. 20 5
942 90.60 radiation 10 14400 < th dose independent rect. 18 11
947 90.61 wind 5 1440 < th dose independent rect. 13 1
964 90.63 radiation 30 43200 < th dose independent rect. 17 7
965 90.63 humidity 70 14400 > th dose independent rect. 21 10
973 90.64 temperature 15 43200 > th dose independent rect. 11 1
996 90.67 atmosphere 1005 1440 > th dose independent rect. 23 1