Os11g0420000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Reverse transcriptase (Fragment).
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Os11g0420000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Reverse transcriptase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 330.52 | 0.854 | 5.31 | 0.728 | 1.09 | 2.2 | 2.53 | -2.24 | 0.777 | 15.8 | 28.8 | 4211 | -- | -- |
| 332.09 | 0.849 | 5.35 | 0.489 | 1.02 | 2.2 | 2.31 | -- | 0.759 | 15.6 | 27.89 | 4218 | -- | -- |
| 347.29 | 0.868 | 5.29 | 0.671 | 1.09 | 2.15 | -- | -1.47 | 0.831 | 15.5 | 28.3 | 4196 | -- | -- |
| 348.03 | 0.869 | 5.34 | 0.36 | 1.08 | 2.02 | -- | -- | 0.747 | 15.4 | 27.87 | 4218 | -- | -- |
| 410.85 | 0.944 | 5.31 | 0.626 | -- | 2.31 | -- | -0.998 | 0.794 | -- | 27.8 | 4113 | -- | -- |
| 456.5 | 1 | 5.39 | -0.37 | 1.24 | -- | 2.68 | -- | 0.59 | 15.5 | -- | -- | -- | -- |
| 478.14 | 1.02 | 5.37 | -0.323 | 1.25 | -- | -- | -- | 0.605 | 15.2 | -- | -- | -- | -- |
| 410.17 | 0.943 | 5.33 | 0.403 | -- | 2.26 | -- | -- | 0.792 | -- | 27.45 | 4088 | -- | -- |
| 351 | 0.873 | 5.35 | -- | 1.08 | 1.92 | -- | -- | 0.724 | 15.5 | 28 | 4199 | -- | -- |
| 566.2 | 1.11 | 5.38 | -0.376 | -- | -- | -- | -- | 0.573 | -- | -- | -- | -- | -- |
| 480.89 | 1.03 | 5.37 | -- | 1.25 | -- | -- | -- | 0.641 | 15.2 | -- | -- | -- | -- |
| 413.77 | 0.947 | 5.35 | -- | -- | 2.12 | -- | -- | 0.679 | -- | 27.94 | 4099 | -- | -- |
| 569.93 | 1.11 | 5.37 | -- | -- | -- | -- | -- | 0.614 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 321.06 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 8 |
| 4 | 322.39 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 8 | 3 |
| 5 | 322.47 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 10 | 322.53 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 14 | 322.58 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 24 | 322.68 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 34 | 322.82 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 40 | 322.95 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 157 | 324.46 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 175 | 324.60 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 182 | 324.68 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 222 | 324.88 | wind | 7.0 | 43200 | > th | dose independent | rect. | 6 | 7 |
| 238 | 324.94 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 6 | 20 |
| 272 | 325.02 | temperature | 25.0 | 14400 | > th | dose dependent | no | NA | NA |
| 285 | 325.08 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 309 | 325.30 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 10 | 23 |
| 326 | 325.53 | wind | 7.0 | 43200 | < th | dose independent | rect. | 6 | 7 |
| 336 | 325.61 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 346 | 325.74 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 379 | 326.08 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 390 | 326.18 | wind | 7.0 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 392 | 326.20 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 399 | 326.26 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 415 | 326.43 | wind | 7.0 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 475 | 326.85 | temperature | 25.0 | 14400 | > th | dose independent | sin | 6 | NA |
| 494 | 327.05 | temperature | 25.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 580 | 327.78 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 2 |
| 587 | 327.82 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 19 | 20 |
| 592 | 327.85 | temperature | 25.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 670 | 328.20 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 21 |
| 699 | 328.30 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 700 | 328.31 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 21 | 18 |
| 729 | 328.41 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 17 |
| 740 | 328.44 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 758 | 328.51 | temperature | 25.0 | 14400 | > th | dose independent | no | NA | NA |
| 759 | 328.51 | temperature | 25.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 775 | 328.56 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 788 | 328.59 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 22 | 23 |
| 804 | 328.64 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 823 | 328.70 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 841 | 328.74 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 842 | 328.74 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 864 | 328.82 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 865 | 328.83 | temperature | 25.0 | 14400 | < th | dose independent | no | NA | NA |
| 866 | 328.84 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 872 | 328.84 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 916 | 329.03 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 917 | 329.03 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 924 | 329.08 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 15 | 19 |
| 933 | 329.10 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 966 | 329.20 | wind | 3.0 | 43200 | > th | dose dependent | sin | 5 | NA |
| 981 | 329.27 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 997 | 329.33 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 15 | 11 |