Os11g0417300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os11g0417300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.59 | 0.218 | 8.75 | 0.38 | 0.275 | -0.137 | -0.0196 | -1.49 | 0.078 | 2.87 | 24.9 | 4297 | -- | -- |
| 23.21 | 0.224 | 8.8 | 0.0523 | 0.296 | -0.172 | 0.0985 | -- | 0.0133 | 2.47 | 28.3 | 4715 | -- | -- |
| 21.6 | 0.216 | 8.75 | 0.38 | 0.275 | -0.137 | -- | -1.49 | 0.078 | 2.88 | 24.89 | 4298 | -- | -- |
| 22.83 | 0.223 | 8.79 | 0.00439 | 0.279 | -0.2 | -- | -- | 0.0373 | 3.03 | 31.5 | 4497 | -- | -- |
| 25.75 | 0.236 | 8.76 | 0.362 | -- | -0.198 | -- | -1.44 | 0.0699 | -- | 24.9 | 4073 | -- | -- |
| 24.31 | 0.231 | 8.8 | 0.0567 | 0.289 | -- | 0.0335 | -- | 0.0069 | 2.86 | -- | -- | -- | -- |
| 24.31 | 0.231 | 8.8 | 0.0559 | 0.289 | -- | -- | -- | 0.00671 | 2.85 | -- | -- | -- | -- |
| 27.07 | 0.242 | 8.79 | 0.00913 | -- | -0.247 | -- | -- | 0.0474 | -- | 31.8 | 4030 | -- | -- |
| 22.82 | 0.223 | 8.79 | -- | 0.277 | -0.204 | -- | -- | 0.0412 | 2.94 | 31.4 | 4497 | -- | -- |
| 29.12 | 0.252 | 8.8 | 0.0683 | -- | -- | -- | -- | 0.0141 | -- | -- | -- | -- | -- |
| 24.39 | 0.231 | 8.8 | -- | 0.29 | -- | -- | -- | 0.00048 | 2.85 | -- | -- | -- | -- |
| 26.96 | 0.242 | 8.79 | -- | -- | -0.207 | -- | -- | 0.0439 | -- | 31.5 | 2600 | -- | -- |
| 29.25 | 0.252 | 8.8 | -- | -- | -- | -- | -- | 0.00654 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.24 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 5 | 21.29 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 12 | 21.32 | temperature | 25 | 4320 | < th | dose independent | sin | 9 | NA |
| 23 | 21.33 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 18 |
| 36 | 21.36 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 49 | 21.38 | temperature | 25 | 4320 | > th | dose independent | sin | 10 | NA |
| 56 | 21.38 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 18 |
| 66 | 21.39 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 11 | 19 |
| 177 | 21.47 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 20 |
| 205 | 21.49 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 17 |
| 256 | 21.52 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 279 | 21.53 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 21 |
| 324 | 21.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 17 |
| 353 | 21.57 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 3 |
| 354 | 21.57 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 10 |
| 369 | 21.58 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 418 | 21.61 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 434 | 21.61 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 472 | 21.63 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 518 | 21.65 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 17 |
| 537 | 21.66 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 539 | 21.66 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 21 | 22 |
| 549 | 21.66 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 15 |
| 553 | 21.66 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 18 |
| 559 | 21.67 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 561 | 21.67 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 582 | 21.67 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 15 |
| 595 | 21.67 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 21 |
| 598 | 21.67 | radiation | 10 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 621 | 21.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 12 |
| 676 | 21.69 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 682 | 21.69 | temperature | 20 | 4320 | > th | dose dependent | sin | 16 | NA |
| 684 | 21.69 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 685 | 21.69 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 717 | 21.69 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 718 | 21.70 | atmosphere | 1000 | 270 | > th | dose independent | no | NA | NA |
| 734 | 21.70 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 740 | 21.70 | temperature | 20 | 4320 | > th | dose dependent | rect. | 14 | 12 |
| 767 | 21.70 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 790 | 21.71 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 792 | 21.71 | temperature | 20 | 4320 | > th | dose dependent | rect. | 16 | 10 |
| 836 | 21.72 | temperature | 20 | 4320 | > th | dose dependent | sin | 7 | NA |
| 873 | 21.72 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 886 | 21.73 | radiation | 10 | 10 | > th | dose independent | rect. | 12 | 23 |
| 889 | 21.73 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 920 | 21.73 | radiation | 1 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 959 | 21.74 | temperature | 30 | 4320 | < th | dose dependent | rect. | 16 | 10 |