Os11g0312000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0312000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.77 | 0.325 | 8.67 | -0.306 | 0.395 | -1.05 | 0.409 | -1.23 | 0.378 | 1.96 | 26.2 | 2 | -- | -- |
| 49.57 | 0.33 | 8.69 | -0.515 | 0.395 | -0.974 | -0.0389 | -- | 0.331 | 2.09 | 26.7 | 2 | -- | -- |
| 48.21 | 0.326 | 8.67 | -0.366 | 0.388 | -1.02 | -- | -0.912 | 0.366 | 2.04 | 26.2 | 2 | -- | -- |
| 49.56 | 0.328 | 8.69 | -0.515 | 0.395 | -0.975 | -- | -- | 0.331 | 2.09 | 26.7 | 2 | -- | -- |
| 53.76 | 0.341 | 8.65 | -0.328 | -- | -0.852 | -- | -0.883 | 0.45 | -- | 24.1 | 4 | -- | -- |
| 63.63 | 0.374 | 8.64 | -0.287 | 0.127 | -- | -0.105 | -- | 0.545 | 2.7 | -- | -- | -- | -- |
| 63.67 | 0.374 | 8.64 | -0.285 | 0.126 | -- | -- | -- | 0.545 | 2.57 | -- | -- | -- | -- |
| 50.98 | 0.333 | 8.67 | -0.575 | -- | -0.896 | -- | -- | 0.381 | -- | 34.6 | 1328 | -- | -- |
| 55.9 | 0.35 | 8.67 | -- | 0.328 | -0.779 | -- | -- | 0.427 | 2.08 | 26.58 | 3 | -- | -- |
| 64.6 | 0.376 | 8.64 | -0.279 | -- | -- | -- | -- | 0.549 | -- | -- | -- | -- | -- |
| 65.81 | 0.379 | 8.63 | -- | 0.12 | -- | -- | -- | 0.577 | 2.53 | -- | -- | -- | -- |
| 58.08 | 0.355 | 8.65 | -- | -- | -0.663 | -- | -- | 0.483 | -- | 42.03 | 1252 | -- | -- |
| 66.66 | 0.381 | 8.63 | -- | -- | -- | -- | -- | 0.58 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.87 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 20 |
| 2 | 45.89 | temperature | 25 | 90 | < th | dose dependent | rect. | 10 | 20 |
| 70 | 48.31 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 77 | 48.38 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 78 | 48.41 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 82 | 48.43 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 84 | 48.44 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 87 | 48.48 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 91 | 48.49 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 105 | 48.55 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 106 | 48.57 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 108 | 48.58 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 120 | 48.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 122 | 48.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 130 | 48.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 135 | 48.88 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 145 | 48.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 191 | 49.19 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 195 | 49.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 18 |
| 197 | 49.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 214 | 49.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 21 |
| 219 | 49.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 243 | 49.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 12 |
| 284 | 49.30 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 295 | 49.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 302 | 49.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 14 |
| 310 | 49.32 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 416 | 49.40 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 442 | 49.42 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 443 | 49.42 | temperature | 25 | 1440 | < th | dose dependent | sin | 5 | NA |
| 496 | 49.45 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 532 | 49.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 9 |
| 772 | 49.60 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 846 | 49.64 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 851 | 49.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 6 |
| 893 | 49.67 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 996 | 49.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 8 |