Os11g0308800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0308800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein kinase-like domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 226.06 | 0.706 | 3.26 | -0.256 | 0.489 | 1.56 | -0.457 | -4.21 | 0.209 | 19 | 30.1 | 420 | -- | -- |
| 227.35 | 0.702 | 3.22 | 0.0826 | 0.539 | 1.13 | -0.545 | -- | 0.247 | 19 | 30.6 | 450 | -- | -- |
| 226.55 | 0.701 | 3.27 | -0.267 | 0.505 | 1.55 | -- | -4.47 | 0.208 | 18.9 | 30.1 | 414 | -- | -- |
| 228.01 | 0.703 | 3.22 | 0.141 | 0.566 | 1.07 | -- | -- | 0.259 | 18.6 | 30.6 | 451 | -- | -- |
| 233.51 | 0.712 | 3.28 | -0.397 | -- | 1.76 | -- | -4.15 | 0.0686 | -- | 29.5 | 478 | -- | -- |
| 251.01 | 0.743 | 3.24 | 0.271 | 0.875 | -- | 0.137 | -- | 0.173 | 18.4 | -- | -- | -- | -- |
| 251.06 | 0.742 | 3.24 | 0.269 | 0.876 | -- | -- | -- | 0.174 | 18.5 | -- | -- | -- | -- |
| 234.61 | 0.713 | 3.23 | 0.061 | -- | 1.33 | -- | -- | 0.117 | -- | 29.45 | 492 | -- | -- |
| 228.37 | 0.704 | 3.22 | -- | 0.541 | 1.08 | -- | -- | 0.244 | 18.6 | 30.4 | 459 | -- | -- |
| 290.93 | 0.797 | 3.23 | 0.246 | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
| 252.96 | 0.744 | 3.25 | -- | 0.872 | -- | -- | -- | 0.144 | 18.5 | -- | -- | -- | -- |
| 234.71 | 0.714 | 3.24 | -- | -- | 1.34 | -- | -- | 0.11 | -- | 29.43 | 492 | -- | -- |
| 292.54 | 0.798 | 3.23 | -- | -- | -- | -- | -- | 0.128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 219.11 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 8 |
| 2 | 219.18 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 14 |
| 32 | 220.34 | humidity | 90 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 36 | 220.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 55 | 221.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 8 |
| 64 | 221.69 | humidity | 90 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 66 | 221.71 | humidity | 90 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 70 | 221.74 | temperature | 25 | 270 | > th | dose dependent | sin | 17 | NA |
| 101 | 222.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 106 | 222.75 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 111 | 222.79 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 14 |
| 114 | 222.81 | wind | 9 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 146 | 222.81 | wind | 9 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 255 | 223.88 | wind | 1 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 258 | 223.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 270 | 223.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 322 | 224.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 13 |
| 330 | 224.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 11 |
| 339 | 224.67 | temperature | 30 | 270 | > th | dose independent | rect. | 12 | 6 |
| 345 | 224.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 370 | 224.84 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 1 |
| 384 | 225.03 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 13 |
| 464 | 225.79 | temperature | 20 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 508 | 226.21 | temperature | 20 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 518 | 226.31 | wind | 1 | 720 | < th | dose independent | rect. | 7 | 1 |
| 574 | 226.90 | temperature | 30 | 270 | < th | dose independent | rect. | 12 | 12 |
| 578 | 226.93 | temperature | 30 | 270 | > th | dose independent | sin | 17 | NA |
| 590 | 227.10 | temperature | 20 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 593 | 227.13 | temperature | 30 | 270 | < th | dose independent | sin | 17 | NA |
| 630 | 227.31 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 23 |
| 632 | 227.31 | temperature | 20 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 664 | 227.52 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 8 |
| 676 | 227.57 | temperature | 30 | 270 | > th | dose independent | rect. | 15 | 1 |
| 716 | 227.94 | temperature | 25 | 10 | > th | dose independent | rect. | 14 | 8 |
| 724 | 228.01 | temperature | 30 | 90 | < th | dose dependent | sin | 17 | NA |
| 738 | 228.09 | temperature | 30 | 10 | < th | dose dependent | sin | 16 | NA |
| 748 | 228.15 | wind | 1 | 720 | < th | dose independent | rect. | 6 | 3 |
| 749 | 228.15 | temperature | 25 | 10 | > th | dose independent | rect. | 14 | 6 |
| 762 | 228.20 | temperature | 20 | 720 | < th | dose independent | rect. | 7 | 1 |
| 802 | 228.47 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 23 |
| 833 | 228.70 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 838 | 228.73 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 877 | 228.90 | humidity | 80 | 270 | < th | dose dependent | rect. | 13 | 6 |
| 878 | 228.90 | temperature | 20 | 720 | < th | dose dependent | rect. | 7 | 8 |
| 928 | 229.03 | radiation | 20 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 929 | 229.04 | radiation | 20 | 270 | > th | dose dependent | rect. | 15 | 2 |
| 967 | 229.14 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 17 |