Os11g0308500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os11g0308500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.77 | 0.523 | 2.96 | 0.162 | 0.49 | 0.382 | 0.0939 | 0.0873 | -0.0397 | 0.902 | 2.26 | 12 | -- | -- |
| 123.8 | 0.518 | 2.96 | 0.164 | 0.513 | 0.399 | 0.016 | -- | -0.0484 | 0.809 | 2.37 | 11 | -- | -- |
| 123.78 | 0.518 | 2.96 | 0.16 | 0.5 | 0.39 | -- | 0.0384 | -0.0413 | 0.883 | 2.374 | 11 | -- | -- |
| 123.78 | 0.518 | 2.96 | 0.162 | 0.493 | 0.385 | -- | -- | -0.041 | 0.898 | 2.37 | 11 | -- | -- |
| 128.13 | 0.53 | 2.95 | 0.17 | -- | 0.0692 | -- | 0.0865 | -0.0168 | -- | 2.374 | 11 | -- | -- |
| 127.35 | 0.529 | 2.94 | 0.163 | 0.159 | -- | -0.174 | -- | -0.0182 | 5.34 | -- | -- | -- | -- |
| 127.43 | 0.529 | 2.94 | 0.163 | 0.158 | -- | -- | -- | -0.0174 | 5.26 | -- | -- | -- | -- |
| 128.13 | 0.53 | 2.95 | 0.169 | -- | 0.0728 | -- | -- | -0.0169 | -- | 2.266 | 11 | -- | -- |
| 124.47 | 0.52 | 2.96 | -- | 0.474 | 0.372 | -- | -- | -0.049 | 0.953 | 2.37 | 11 | -- | -- |
| 128.73 | 0.53 | 2.95 | 0.168 | -- | -- | -- | -- | -0.0135 | -- | -- | -- | -- | -- |
| 128.13 | 0.529 | 2.95 | -- | 0.16 | -- | -- | -- | -0.0356 | 5.22 | -- | -- | -- | -- |
| 128.79 | 0.529 | 2.95 | -- | -- | -0.115 | -- | -- | -0.028 | -- | 27.66 | 11 | -- | -- |
| 129.48 | 0.531 | 2.95 | -- | -- | -- | -- | -- | -0.0322 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.84 | wind | 7.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 2 | 109.99 | wind | 7.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 13 | 112.97 | humidity | 90.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 15 | 113.50 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 17 | 113.73 | wind | 5.0 | 10 | > th | dose independent | rect. | 10 | 1 |
| 21 | 113.73 | wind | 5.0 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 47 | 114.92 | wind | 9.0 | 90 | > th | dose dependent | rect. | 22 | 12 |
| 84 | 117.81 | wind | 7.0 | 90 | > th | dose independent | rect. | 22 | 12 |
| 90 | 117.90 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 97 | 117.90 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 304 | 121.85 | radiation | 10.0 | 30 | > th | dose independent | sin | 11 | NA |
| 306 | 121.87 | wind | 7.0 | 10 | > th | dose independent | rect. | 15 | 19 |
| 311 | 121.93 | wind | 5.0 | 30 | > th | dose dependent | rect. | 15 | 20 |
| 315 | 121.94 | wind | 7.0 | 720 | > th | dose independent | rect. | 3 | 6 |
| 330 | 122.01 | wind | 7.0 | 720 | > th | dose independent | rect. | 1 | 8 |
| 372 | 122.19 | wind | 7.0 | 10 | > th | dose independent | rect. | 12 | 22 |
| 376 | 122.21 | radiation | 10.0 | 30 | > th | dose independent | rect. | 15 | 19 |
| 378 | 122.24 | wind | 7.0 | 10 | > th | dose independent | rect. | 15 | 1 |
| 421 | 122.39 | radiation | 10.0 | 30 | > th | dose independent | rect. | 6 | 4 |
| 442 | 122.46 | wind | 5.0 | 10 | > th | dose dependent | rect. | 15 | 2 |
| 496 | 122.66 | radiation | 30.0 | 30 | < th | dose independent | rect. | 5 | 6 |
| 509 | 122.71 | wind | 7.0 | 10 | > th | dose independent | rect. | 12 | 5 |
| 512 | 122.72 | radiation | 30.0 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 540 | 122.78 | temperature | 20.0 | 30 | > th | dose independent | rect. | 5 | 6 |
| 564 | 122.85 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 22 | 2 |
| 575 | 122.85 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 22 | 2 |
| 582 | 122.87 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 19 | 15 |
| 590 | 122.91 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 20 | 3 |
| 593 | 122.91 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 20 | 3 |
| 616 | 122.99 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 20 | 1 |
| 629 | 122.99 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 20 | 1 |
| 631 | 123.00 | humidity | 90.0 | 270 | > th | dose independent | rect. | 4 | 18 |
| 665 | 123.08 | humidity | 90.0 | 270 | > th | dose independent | rect. | 5 | 4 |
| 667 | 123.08 | wind | 7.0 | 720 | > th | dose independent | rect. | 22 | 12 |
| 669 | 123.08 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 681 | 123.11 | wind | 5.0 | 10 | > th | dose dependent | rect. | 15 | 10 |
| 682 | 123.11 | wind | 5.0 | 10 | > th | dose dependent | rect. | 15 | 14 |
| 689 | 123.13 | wind | 1.0 | 90 | < th | dose independent | rect. | 6 | 6 |
| 691 | 123.13 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 11 | 18 |
| 708 | 123.17 | wind | 3.0 | 10 | < th | dose independent | rect. | 7 | 2 |
| 712 | 123.17 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 15 | 2 |
| 715 | 123.19 | radiation | 10.0 | 30 | < th | dose independent | sin | 11 | NA |
| 716 | 123.19 | radiation | 40.0 | 90 | > th | dose independent | rect. | 14 | 1 |
| 737 | 123.20 | temperature | 25.0 | 30 | > th | dose independent | rect. | 9 | 20 |
| 739 | 123.21 | radiation | 30.0 | 90 | > th | dose independent | rect. | 7 | 1 |
| 779 | 123.26 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 22 | 1 |
| 782 | 123.26 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 791 | 123.28 | radiation | 30.0 | 90 | < th | dose independent | rect. | 19 | 15 |
| 888 | 123.40 | wind | 7.0 | 10 | > th | dose independent | rect. | 15 | 14 |
| 900 | 123.41 | radiation | 1.0 | 270 | < th | dose independent | rect. | 6 | 1 |
| 906 | 123.41 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 12 |
| 908 | 123.42 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 936 | 123.42 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 954 | 123.45 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 5 | 4 |
| 964 | 123.48 | humidity | 80.0 | 90 | > th | dose independent | rect. | 7 | 4 |
| 970 | 123.49 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 6 |
| 973 | 123.49 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 5 | 5 |
| 977 | 123.50 | radiation | 20.0 | 30 | < th | dose dependent | sin | 10 | NA |
| 985 | 123.51 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 987 | 123.52 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 18 | 8 |
| 989 | 123.52 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 15 | 11 |
| 996 | 123.53 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 9 | 2 |