Os11g0307600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor.
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Os11g0307600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.13 | 0.266 | 9.27 | 1.48 | 1.23 | -1.74 | -1.18 | -4.51 | 0.423 | 20.4 | 20.44 | 281 | -- | -- |
| 37.52 | 0.285 | 9.34 | 1.26 | 1.24 | -0.4 | -1.04 | -- | 0.351 | 20.2 | 24.71 | 471 | -- | -- |
| 36.26 | 0.28 | 9.28 | 1.52 | 1.24 | -1.49 | -- | -4.08 | 0.428 | 20.4 | 20.53 | 238 | -- | -- |
| 40.11 | 0.295 | 9.33 | 1.36 | 1.23 | -0.39 | -- | -- | 0.351 | 20.2 | 25.1 | 501 | -- | -- |
| 117.56 | 0.505 | 9.28 | 1.51 | -- | -1.18 | -- | -1.9 | 0.337 | -- | 22.86 | 559 | -- | -- |
| 39.54 | 0.295 | 9.32 | 1.44 | 1.27 | -- | -0.969 | -- | 0.432 | 20.3 | -- | -- | -- | -- |
| 42.43 | 0.305 | 9.32 | 1.47 | 1.27 | -- | -- | -- | 0.432 | 20.2 | -- | -- | -- | -- |
| 103.16 | 0.473 | 9.33 | 1.14 | -- | -1.36 | -- | -- | 0.217 | -- | 93.91 | 596 | -- | -- |
| 53.75 | 0.341 | 9.42 | -- | 1.26 | -1.11 | -- | -- | -0.00696 | 20.2 | 22.51 | 47520 | -- | -- |
| 131.77 | 0.536 | 9.28 | 1.46 | -- | -- | -- | -- | 0.418 | -- | -- | -- | -- | -- |
| 99.56 | 0.467 | 9.35 | -- | 1.26 | -- | -- | -- | 0.268 | 20.3 | -- | -- | -- | -- |
| 134.57 | 0.54 | 9.37 | -- | -- | -1.78 | -- | -- | 0.0387 | -- | 127.1 | 618 | -- | -- |
| 188.23 | 0.64 | 9.32 | -- | -- | -- | -- | -- | 0.255 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.77 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 8 | 13 |
| 2 | 31.92 | temperature | 20.0 | 720 | < th | dose independent | sin | 21 | NA |
| 4 | 32.01 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 8 | 32.15 | temperature | 20.0 | 720 | < th | dose independent | rect. | 7 | 16 |
| 9 | 32.19 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 12 | 32.24 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 14 | 32.26 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 16 | 32.28 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 18 | 32.29 | temperature | 20.0 | 720 | < th | dose independent | rect. | 8 | 13 |
| 23 | 32.37 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 31 | 32.42 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 33 | 32.46 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 34 | 32.48 | temperature | 20.0 | 720 | < th | dose independent | rect. | 18 | 8 |
| 44 | 32.52 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 56 | 32.54 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 16 | 20 |
| 69 | 32.55 | temperature | 20.0 | 720 | > th | dose independent | rect. | 6 | 17 |
| 71 | 32.55 | temperature | 20.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 72 | 32.55 | temperature | 20.0 | 270 | < th | dose dependent | no | NA | NA |
| 103 | 32.60 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 108 | 32.61 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 123 | 32.64 | temperature | 20.0 | 270 | > th | dose independent | rect. | 10 | 23 |
| 124 | 32.65 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 129 | 32.65 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 135 | 32.67 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 144 | 32.69 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 23 |
| 145 | 32.69 | temperature | 20.0 | 270 | < th | dose dependent | sin | 22 | NA |
| 169 | 32.73 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 181 | 32.73 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 193 | 32.75 | temperature | 20.0 | 720 | > th | dose independent | sin | 22 | NA |
| 230 | 32.81 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 232 | 32.81 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 335 | 32.90 | temperature | 20.0 | 270 | < th | dose independent | rect. | 24 | 23 |
| 345 | 32.91 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 363 | 32.94 | temperature | 20.0 | 270 | < th | dose independent | rect. | 16 | 20 |
| 376 | 32.96 | temperature | 20.0 | 270 | < th | dose independent | no | NA | NA |
| 377 | 32.96 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 467 | 33.00 | temperature | 20.0 | 270 | < th | dose independent | rect. | 11 | 23 |
| 473 | 33.01 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 13 | 9 |
| 526 | 33.05 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 9 |
| 543 | 33.08 | temperature | 20.0 | 270 | > th | dose independent | no | NA | NA |
| 556 | 33.09 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 576 | 33.12 | temperature | 20.0 | 720 | < th | dose independent | rect. | 19 | 2 |
| 586 | 33.13 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 593 | 33.13 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 607 | 33.15 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 20 |
| 677 | 33.25 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 694 | 33.27 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 792 | 33.43 | temperature | 20.0 | 270 | < th | dose independent | sin | 11 | NA |
| 817 | 33.46 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 5 |
| 833 | 33.48 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 9 | 13 |
| 848 | 33.50 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 20 | 14 |
| 889 | 33.54 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 919 | 33.58 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 963 | 33.62 | wind | 7.0 | 1440 | > th | dose independent | rect. | 2 | 7 |
| 995 | 33.66 | temperature | 20.0 | 270 | < th | dose dependent | sin | 11 | NA |