Os11g0305300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os11g0305300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.27 | 0.611 | 6.66 | -0.757 | 1.13 | 1.52 | -1.34 | -1.13 | 0.00794 | 0.0309 | 20.67 | 510 | -- | -- |
| 173.23 | 0.613 | 6.63 | -0.509 | 1.13 | 1.6 | -1.52 | -- | 0.0611 | 0.00944 | 20.68 | 489 | -- | -- |
| 176.78 | 0.619 | 6.66 | -0.763 | 1.13 | 1.51 | -- | -1.38 | -0.00127 | 24 | 20.65 | 525 | -- | -- |
| 182.81 | 0.63 | 6.62 | -0.473 | 1.14 | 1.61 | -- | -- | 0.0633 | 0.0845 | 20.68 | 490 | -- | -- |
| 236.69 | 0.717 | 6.68 | -0.895 | -- | 1.77 | -- | -1.21 | -0.146 | -- | 21.3 | 887 | -- | -- |
| 256.07 | 0.75 | 6.55 | 0.0194 | 1.22 | -- | -1.54 | -- | 0.421 | 23.4 | -- | -- | -- | -- |
| 266.27 | 0.764 | 6.55 | 0.0821 | 1.23 | -- | -- | -- | 0.427 | 23.4 | -- | -- | -- | -- |
| 241.86 | 0.724 | 6.63 | -0.524 | -- | 1.84 | -- | -- | -0.0419 | -- | 21.4 | 901 | -- | -- |
| 188.17 | 0.639 | 6.61 | -- | 1.15 | 1.49 | -- | -- | 0.139 | 0.00929 | 20.63 | 488 | -- | -- |
| 361.42 | 0.888 | 6.52 | 0.114 | -- | -- | -- | -- | 0.44 | -- | -- | -- | -- | -- |
| 266.45 | 0.764 | 6.55 | -- | 1.23 | -- | -- | -- | 0.418 | 23.4 | -- | -- | -- | -- |
| 249.87 | 0.736 | 6.61 | -- | -- | 1.7 | -- | -- | 0.0292 | -- | 21.33 | 885 | -- | -- |
| 361.77 | 0.888 | 6.52 | -- | -- | -- | -- | -- | 0.427 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.11 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 170.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 14 |
| 3 | 170.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 24 | 171.56 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 28 | 171.62 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 83 | 172.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 113 | 173.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 145 | 173.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 155 | 173.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 254 | 175.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 289 | 176.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 309 | 176.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 370 | 176.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 376 | 177.05 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 23 |
| 418 | 177.47 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 453 | 177.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 473 | 177.86 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 477 | 177.86 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 480 | 177.92 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 507 | 178.14 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 516 | 178.20 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 532 | 178.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 539 | 178.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 543 | 178.33 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 545 | 178.36 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 562 | 178.48 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 573 | 178.52 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 14 |
| 588 | 178.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 603 | 178.73 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 613 | 178.78 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 625 | 178.86 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 628 | 178.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 4 |
| 630 | 178.90 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 640 | 178.93 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 659 | 179.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 677 | 179.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 768 | 179.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 789 | 179.55 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 801 | 179.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 886 | 179.93 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |