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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0303800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.68 (0.0307) R2 : 0.363
β1 : -1.21 (0.113) R2dD : 0.168 R2D : 0.0492
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.2 (0.112) R2dE : 0.168 R2E : 0.133
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.494 (0.066) R2dN8 : 0.107 R2N8 : 0.0772
σ : 0.573
deviance : 151.24
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.31
memory length : 378
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.38 0.566 3.69 -1.39 0.301 1.54 -0.346 -2.89 -0.483 12.4 30.5 445 -- --
145.57 0.562 3.67 -1.17 0.302 1.22 -0.337 -- -0.483 12.2 30.5 443 -- --
145.82 0.562 3.7 -1.44 0.287 1.58 -- -3.3 -0.488 12.3 30.5 410 -- --
146.08 0.563 3.67 -1.18 0.3 1.22 -- -- -0.48 12.3 30.51 445 -- --
150.59 0.572 3.72 -1.52 -- 1.7 -- -4.43 -0.496 -- 30.6 342 -- --
176.33 0.623 3.7 -1.04 0.483 -- 0.15 -- -0.583 15.6 -- -- -- --
176.39 0.622 3.7 -1.04 0.483 -- -- -- -0.582 15.6 -- -- -- --
151.24 0.573 3.68 -1.21 -- 1.2 -- -- -0.494 -- 30.31 378 -- --
182.94 0.63 3.65 -- 0.316 1.06 -- -- -0.371 12.5 30.5 445 -- --
189.42 0.643 3.7 -1.06 -- -- -- -- -0.595 -- -- -- -- --
204.95 0.67 3.67 -- 0.504 -- -- -- -0.467 15.5 -- -- -- --
188.77 0.64 3.65 -- -- 1.09 -- -- -0.366 -- 30.6 357 -- --
219.12 0.691 3.67 -- -- -- -- -- -0.478 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 140.02 temperature 30 270 < th dose independent rect. 8 22
3 140.98 temperature 25 720 > th dose dependent rect. 7 1
4 141.71 humidity 50 90 > th dose dependent rect. 10 20
8 141.88 temperature 25 10 > th dose dependent sin 11 NA
9 142.05 temperature 25 10 > th dose dependent rect. 15 17
10 142.09 temperature 25 90 > th dose dependent rect. 15 18
11 142.17 temperature 25 10 > th dose dependent rect. 15 19
23 142.91 temperature 30 90 < th dose independent rect. 10 20
26 143.18 humidity 60 270 > th dose independent rect. 8 21
35 143.60 temperature 30 270 > th dose independent rect. 14 4
40 143.78 temperature 10 30 > th dose dependent rect. 6 15
57 144.31 temperature 30 270 > th dose independent rect. 14 20
59 144.37 temperature 30 270 > th dose independent rect. 15 1
67 144.57 temperature 30 90 > th dose independent rect. 15 18
70 144.64 humidity 90 30 < th dose dependent rect. 17 15
73 144.69 humidity 90 90 < th dose dependent rect. 15 17
93 145.15 temperature 30 30 < th dose independent sin 12 NA
94 145.17 temperature 30 270 < th dose independent rect. 8 10
116 145.38 temperature 30 90 > th dose independent sin 12 NA
128 145.59 temperature 30 720 < th dose independent rect. 2 9
132 145.65 humidity 90 10 < th dose dependent rect. 15 19
184 146.14 temperature 30 270 > th dose independent sin 17 NA
186 146.17 humidity 90 10 < th dose dependent rect. 17 17
191 146.26 humidity 90 10 < th dose dependent rect. 15 17
192 146.27 radiation 20 720 > th dose dependent rect. 16 16
195 146.29 temperature 30 720 < th dose independent rect. 8 5
210 146.49 humidity 50 90 > th dose dependent sin 13 NA
242 146.75 temperature 30 270 > th dose dependent rect. 14 2
250 146.87 temperature 30 270 < th dose independent rect. 9 13
255 146.90 humidity 80 10 < th dose dependent sin 11 NA
257 146.92 humidity 80 90 < th dose dependent sin 11 NA
261 146.95 temperature 30 720 < th dose independent rect. 1 12
303 147.26 radiation 1 90 > th dose dependent rect. 17 15
305 147.28 temperature 30 720 < th dose independent rect. 8 7
325 147.46 temperature 20 90 > th dose dependent rect. 15 12
344 147.53 temperature 15 30 > th dose dependent rect. 6 17
364 147.59 atmosphere 1005 90 < th dose independent rect. 15 4
373 147.70 temperature 30 720 < th dose independent rect. 24 15
417 147.96 temperature 30 270 > th dose dependent sin 16 NA
451 148.13 temperature 30 10 < th dose dependent rect. 10 20
454 148.14 radiation 20 720 > th dose dependent rect. 7 1
484 148.36 temperature 20 90 > th dose independent rect. 6 14
517 148.54 humidity 70 10 < th dose independent rect. 16 18
544 148.66 humidity 60 270 > th dose independent rect. 8 9
545 148.66 radiation 20 720 > th dose independent rect. 16 16
549 148.67 radiation 20 90 < th dose dependent sin 11 NA
564 148.78 radiation 10 90 > th dose independent rect. 17 14
588 148.88 temperature 10 270 > th dose dependent rect. 13 11
609 148.90 radiation 30 720 > th dose independent rect. 7 1
657 149.04 temperature 30 270 > th dose dependent rect. 8 10
676 149.07 temperature 30 270 > th dose dependent no NA NA
688 149.07 temperature 25 10 > th dose dependent rect. 15 14
877 149.30 temperature 30 720 < th dose independent rect. 19 18
889 149.34 temperature 30 270 < th dose independent rect. 19 23
892 149.36 temperature 30 270 > th dose independent no NA NA
893 149.36 temperature 30 270 > th dose independent rect. 8 11