Os11g0303300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Winged helix repressor DNA-binding domain containing protein.
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Os11g0303300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Winged helix repressor DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.41 | 0.267 | 3.05 | -0.0759 | 0.0654 | 0.756 | -0.151 | -3.56 | -0.00637 | 7.03 | 0.0002648 | 29 | -- | -- |
| 35.01 | 0.276 | 3.04 | -0.0146 | 0.076 | 0.4 | -0.192 | -- | -0.00443 | 6.19 | 0.1291 | 28 | -- | -- |
| 32.47 | 0.265 | 3.05 | -0.0783 | 0.065 | 0.755 | -- | -3.54 | -0.00578 | 7.4 | 0.01091 | 28 | -- | -- |
| 35.05 | 0.276 | 3.04 | -0.009 | 0.0803 | 0.397 | -- | -- | 0.000849 | 7.36 | 2.277e-05 | 28 | -- | -- |
| 32.69 | 0.266 | 3.06 | -0.08 | -- | 0.789 | -- | -3.62 | -0.00422 | -- | 0.03924 | 28 | -- | -- |
| 36.39 | 0.283 | 3.04 | 0.00596 | 0.116 | -- | -0.156 | -- | -0.0144 | 6.09 | -- | -- | -- | -- |
| 36.44 | 0.283 | 3.04 | 0.00477 | 0.116 | -- | -- | -- | -0.0137 | 6.45 | -- | -- | -- | -- |
| 35.38 | 0.277 | 3.04 | -0.0135 | -- | 0.449 | -- | -- | -0.000998 | -- | 0.4511 | 28 | -- | -- |
| 35.05 | 0.276 | 3.04 | -- | 0.081 | 0.404 | -- | -- | -0.000629 | 7.65 | 0.014 | 28 | -- | -- |
| 37.14 | 0.285 | 3.04 | 0.00773 | -- | -- | -- | -- | -0.0113 | -- | -- | -- | -- | -- |
| 36.44 | 0.282 | 3.04 | -- | 0.116 | -- | -- | -- | -0.0142 | 6.44 | -- | -- | -- | -- |
| 35.38 | 0.277 | 3.04 | -- | -- | 0.437 | -- | -- | 0.00189 | -- | 0.5 | 28 | -- | -- |
| 37.14 | 0.284 | 3.04 | -- | -- | -- | -- | -- | -0.0121 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.56 | wind | 1 | 30 | < th | dose dependent | rect. | 5 | 1 |
| 2 | 21.70 | wind | 1 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 9 | 23.09 | wind | 1 | 30 | < th | dose dependent | rect. | 5 | 7 |
| 11 | 23.13 | wind | 1 | 30 | < th | dose independent | rect. | 5 | 1 |
| 16 | 23.67 | wind | 1 | 30 | < th | dose dependent | rect. | 5 | 13 |
| 40 | 26.05 | wind | 1 | 30 | < th | dose independent | rect. | 5 | 7 |
| 63 | 27.36 | wind | 1 | 30 | < th | dose dependent | rect. | 5 | 22 |
| 65 | 27.45 | wind | 1 | 30 | < th | dose independent | rect. | 5 | 13 |
| 94 | 29.87 | wind | 1 | 30 | < th | dose dependent | sin | 2 | NA |
| 133 | 30.49 | wind | 1 | 30 | < th | dose dependent | rect. | 2 | 6 |
| 143 | 30.73 | wind | 1 | 30 | < th | dose dependent | rect. | 2 | 11 |
| 159 | 31.09 | wind | 1 | 30 | < th | dose independent | rect. | 5 | 22 |
| 181 | 31.39 | wind | 1 | 30 | < th | dose dependent | rect. | 2 | 16 |
| 187 | 31.56 | wind | 1 | 30 | < th | dose independent | sin | 2 | NA |
| 202 | 31.75 | wind | 1 | 30 | < th | dose dependent | rect. | 24 | 8 |
| 214 | 31.88 | wind | 1 | 30 | < th | dose dependent | rect. | 24 | 12 |
| 248 | 32.24 | wind | 1 | 30 | < th | dose independent | rect. | 2 | 10 |
| 250 | 32.25 | wind | 1 | 30 | < th | dose dependent | rect. | 24 | 18 |
| 267 | 32.40 | wind | 1 | 30 | > th | dose independent | sin | 2 | NA |
| 274 | 32.49 | wind | 1 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 288 | 32.58 | wind | 1 | 270 | < th | dose independent | rect. | 3 | 1 |
| 299 | 32.75 | wind | 1 | 30 | < th | dose independent | rect. | 24 | 8 |
| 325 | 32.88 | wind | 1 | 30 | < th | dose independent | rect. | 24 | 12 |
| 349 | 33.07 | wind | 1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 389 | 33.22 | wind | 1 | 30 | < th | dose dependent | rect. | 11 | 21 |
| 403 | 33.24 | wind | 1 | 30 | < th | dose dependent | rect. | 17 | 19 |
| 472 | 33.29 | wind | 1 | 30 | < th | dose dependent | no | NA | NA |
| 493 | 33.30 | wind | 1 | 30 | < th | dose independent | rect. | 24 | 18 |
| 594 | 33.91 | wind | 1 | 30 | < th | dose independent | rect. | 11 | 21 |
| 675 | 34.03 | wind | 1 | 30 | < th | dose independent | no | NA | NA |
| 734 | 34.16 | wind | 1 | 30 | < th | dose independent | rect. | 7 | 23 |
| 756 | 34.23 | wind | 1 | 270 | < th | dose independent | rect. | 20 | 10 |
| 770 | 34.26 | wind | 1 | 270 | < th | dose independent | rect. | 11 | 19 |
| 804 | 34.38 | wind | 1 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 808 | 34.40 | wind | 1 | 270 | < th | dose dependent | rect. | 3 | 13 |
| 844 | 34.51 | wind | 1 | 270 | < th | dose dependent | rect. | 20 | 10 |
| 859 | 34.52 | wind | 1 | 30 | > th | dose independent | rect. | 23 | 23 |
| 864 | 34.52 | wind | 1 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 901 | 34.56 | wind | 1 | 270 | < th | dose independent | sin | 9 | NA |
| 967 | 34.63 | wind | 1 | 30 | > th | dose independent | no | NA | NA |
| 970 | 34.63 | wind | 1 | 270 | < th | dose dependent | sin | 7 | NA |
| 978 | 34.64 | wind | 1 | 270 | < th | dose independent | rect. | 7 | 23 |
| 988 | 34.65 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 5 | 1 |