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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0302900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0149) R2 : 0.014
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0797 (0.0314) R2dN8 : 0.018 R2N8 : 0.014
σ : 0.28
deviance : 36.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.25 0.275 2.86 -0.0524 0.0376 -0.221 0.186 1.13 0.069 13.1 1.1 16 -- --
35.37 0.277 2.86 -0.00821 0.0268 -0.127 0.192 -- 0.0814 12.8 1.1 16 -- --
34.39 0.273 2.86 -0.0464 0.037 -0.22 -- 1.21 0.0709 13.3 1.09 16 -- --
35.65 0.278 2.85 0.00232 0.0287 -0.129 -- -- 0.081 12.6 1 16 -- --
34.47 0.273 2.86 -0.0472 -- -0.206 -- 1.2 0.0684 -- 1.093 16 -- --
35.81 0.281 2.85 0.00796 0.0118 -- 0.257 -- 0.0804 12.8 -- -- -- --
36.04 0.281 2.85 0.0167 0.0315 -- -- -- 0.0812 8.09 -- -- -- --
35.71 0.278 2.85 0.000858 -- -0.122 -- -- 0.082 -- 1.047 16 -- --
35.65 0.278 2.85 -- 0.0323 -0.134 -- -- 0.0826 12.8 1.001 16 -- --
36.09 0.281 2.85 0.017 -- -- -- -- 0.0816 -- -- -- -- --
36.05 0.281 2.85 -- 0.0316 -- -- -- 0.0793 8.05 -- -- -- --
35.71 0.278 2.85 -- -- -0.122 -- -- 0.0819 -- 1.049 16 -- --
36.1 0.28 2.85 -- -- -- -- -- 0.0797 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.21 temperature 20.0 30 > th dose dependent rect. 2 1
2 28.30 temperature 20.0 30 > th dose independent rect. 2 1
4 28.33 atmosphere 1005.0 30 > th dose dependent rect. 2 1
6 28.36 atmosphere 1005.0 30 > th dose independent rect. 2 1
7 28.36 wind 3.0 30 < th dose dependent rect. 2 1
11 28.41 humidity 80.0 30 > th dose independent rect. 2 1
13 28.42 wind 3.0 30 < th dose independent rect. 2 1
16 28.45 humidity 60.0 30 > th dose dependent rect. 2 1
23 28.48 temperature 10.0 30 > th dose independent rect. 2 1
25 28.48 temperature 30.0 30 < th dose independent rect. 2 1
26 28.48 humidity 50.0 30 > th dose independent rect. 2 1
30 28.48 atmosphere 1010.0 30 < th dose independent rect. 2 1
32 28.48 radiation 1.0 30 < th dose independent rect. 2 1
37 28.48 precipitation 0.1 30 < th dose independent rect. 2 1
38 28.48 temperature 10.0 30 > th dose independent rect. 3 23
39 28.48 radiation 1.0 30 < th dose dependent rect. 2 1
44 28.48 precipitation 0.1 30 < th dose dependent rect. 2 1
49 28.74 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 28.98 temperature 30.0 30 < th dose dependent rect. 2 1
56 29.23 wind 1.0 30 > th dose independent rect. 2 1
100 30.10 wind 9.0 30 < th dose independent rect. 3 23
102 30.40 radiation 10.0 14400 < th dose dependent rect. 3 1
106 30.41 wind 9.0 1440 < th dose independent rect. 3 1
107 30.41 temperature 10.0 1440 > th dose independent rect. 3 1
110 30.41 temperature 30.0 1440 < th dose independent rect. 3 1
114 30.41 humidity 50.0 1440 > th dose independent rect. 3 1
123 30.41 atmosphere 995.0 1440 > th dose independent rect. 3 1
124 30.41 radiation 1.0 1440 < th dose independent rect. 3 1
144 30.41 temperature 10.0 1440 > th dose independent rect. 4 23
147 30.41 radiation 1.0 1440 < th dose dependent rect. 3 1
164 30.94 atmosphere 995.0 30 > th dose independent rect. 3 23
172 31.53 precipitation 0.1 30 < th dose independent rect. 3 23
173 31.53 precipitation 0.1 30 < th dose dependent rect. 3 23
192 32.68 temperature 25.0 270 > th dose independent rect. 23 4
194 32.72 temperature 30.0 30 < th dose independent rect. 3 23
207 33.01 humidity 50.0 30 > th dose independent rect. 3 23
212 33.11 temperature 25.0 270 > th dose dependent rect. 23 4
270 33.55 wind 1.0 10 > th dose independent rect. 21 23
303 33.81 radiation 10.0 4320 < th dose dependent rect. 21 1
305 33.82 radiation 20.0 43200 < th dose dependent rect. 21 1
328 33.91 humidity 90.0 30 < th dose independent rect. 20 1
330 33.91 temperature 10.0 30 > th dose dependent rect. 20 1
334 33.92 wind 5.0 30 < th dose independent rect. 20 1
335 33.92 temperature 20.0 30 > th dose independent rect. 20 1
338 33.92 temperature 25.0 270 > th dose independent rect. 19 8
340 33.92 atmosphere 1000.0 30 > th dose dependent rect. 20 1
343 33.93 wind 1.0 30 > th dose independent rect. 20 1
347 33.93 temperature 10.0 30 > th dose independent rect. 20 1
349 33.93 temperature 10.0 1440 > th dose independent rect. 21 1
352 33.93 temperature 30.0 30 < th dose independent rect. 20 1
353 33.93 temperature 30.0 1440 < th dose independent rect. 21 1
357 33.93 humidity 50.0 30 > th dose independent rect. 20 1
360 33.93 humidity 50.0 1440 > th dose independent rect. 21 1
366 33.93 atmosphere 995.0 30 > th dose independent rect. 20 1
369 33.93 atmosphere 995.0 1440 > th dose independent rect. 21 1
370 33.93 atmosphere 1010.0 30 < th dose independent rect. 20 1
372 33.93 radiation 1.0 30 < th dose independent rect. 20 1
377 33.93 radiation 1.0 1440 < th dose independent rect. 21 1
397 33.93 precipitation 0.1 30 < th dose independent rect. 20 1
399 33.93 temperature 10.0 30 > th dose independent rect. 21 23
400 33.93 temperature 10.0 1440 > th dose independent rect. 22 23
403 33.93 wind 9.0 30 < th dose dependent rect. 20 1
405 33.93 radiation 1.0 30 < th dose dependent rect. 20 1
412 33.93 precipitation 0.1 30 < th dose dependent rect. 20 1
415 33.94 humidity 50.0 30 > th dose dependent rect. 20 1
423 33.96 wind 1.0 30 > th dose dependent rect. 20 1
424 33.96 humidity 90.0 30 < th dose dependent rect. 20 1
426 33.97 atmosphere 1015.0 30 < th dose dependent rect. 20 1
440 34.01 wind 1.0 30 > th dose independent rect. 3 23
441 34.02 temperature 20.0 30 > th dose dependent rect. 20 7
469 34.10 temperature 30.0 30 < th dose dependent rect. 20 1
470 34.11 atmosphere 1015.0 30 < th dose independent rect. 3 23
474 34.12 humidity 90.0 90 < th dose independent rect. 2 1
510 34.16 wind 9.0 30 < th dose independent rect. 21 23
578 34.29 temperature 25.0 270 > th dose independent sin 11 NA
601 34.35 wind 1.0 10 > th dose independent sin 11 NA
624 34.39 wind 1.0 10 < th dose independent rect. 2 10
659 34.44 temperature 25.0 270 < th dose independent sin 12 NA
730 34.51 temperature 25.0 270 < th dose independent rect. 18 12
732 34.51 temperature 10.0 270 > th dose dependent rect. 17 10
748 34.53 precipitation 0.1 720 < th dose independent rect. 3 6
749 34.53 wind 1.0 10 > th dose independent rect. 21 12
752 34.53 precipitation 0.1 720 < th dose dependent rect. 3 6
756 34.54 wind 1.0 10 > th dose independent no NA NA
767 34.55 wind 9.0 720 < th dose independent rect. 15 6
768 34.55 humidity 60.0 720 > th dose independent rect. 3 6
771 34.55 precipitation 0.1 720 < th dose independent rect. 21 18
774 34.55 precipitation 0.1 720 < th dose dependent rect. 21 18
788 34.56 atmosphere 995.0 720 > th dose independent rect. 21 18
802 34.57 wind 7.0 720 < th dose independent rect. 3 6
805 34.57 temperature 10.0 720 > th dose independent rect. 3 6
807 34.57 atmosphere 995.0 720 > th dose independent rect. 3 6
808 34.57 atmosphere 1015.0 720 < th dose independent rect. 3 6
812 34.57 temperature 10.0 720 > th dose independent rect. 9 18
821 34.58 temperature 10.0 720 > th dose independent rect. 15 6
822 34.58 precipitation 0.1 720 < th dose independent rect. 15 6
827 34.58 temperature 10.0 720 > th dose independent rect. 21 18
828 34.58 humidity 50.0 720 > th dose independent rect. 21 18
832 34.58 precipitation 0.1 720 < th dose dependent rect. 15 6
835 34.59 wind 1.0 720 > th dose independent rect. 15 6
836 34.59 wind 1.0 10 > th dose independent rect. 14 19
850 34.61 precipitation 0.1 720 < th dose independent rect. 9 18
853 34.61 precipitation 0.1 720 < th dose dependent rect. 9 18
858 34.62 temperature 30.0 720 < th dose independent rect. 3 6
863 34.62 wind 1.0 10 > th dose independent rect. 16 17
869 34.63 atmosphere 1015.0 720 < th dose independent rect. 15 6
895 34.65 radiation 40.0 720 < th dose independent rect. 15 6
909 34.66 radiation 10.0 10 < th dose independent rect. 3 23
947 34.68 wind 1.0 10 > th dose independent rect. 13 23
953 34.68 temperature 25.0 720 > th dose dependent rect. 18 3
988 34.70 temperature 25.0 720 > th dose independent rect. 17 4
992 34.70 wind 1.0 30 < th dose dependent rect. 21 6