FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0302300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.68 (0.112) R2 : 0.501
β1 : 5.24 (0.869) R2dD : 0.965 R2D : -2.27
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.06 (0.627) R2dE : 1.4 R2E : -2.13
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -53.7 (5.47) R2dD*E : 4.03 R2D*E : -1.33
γ1 : -0.731 (0.11) R2dN8 : 0.0713 R2N8 : -0.484
σ : 0.918
deviance : 388.33
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 29.94
memory length : 1444
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.2
open length of G : 16.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
371.98 0.906 3.7 5.47 0.512 5.21 -1.75 -54.3 -0.781 1.39 29.98 1440 18.2 16.9
428.64 0.964 4.9 -4.85 0.899 -1.73 -1 -- -1.97 3.31 22.92 47520 23 24
376.57 0.904 3.68 5.31 0.452 5.13 -- -53.7 -0.764 2.04 29.94 1443 18.2 16.9
424.84 0.96 4.93 -4.77 0.718 -1.74 -- -- -2.01 3.8 24.36 47520 23.4 24
388.33 0.918 3.68 5.24 -- 5.06 -- -53.7 -0.731 -- 29.94 1444 18.2 16.9
471.25 1.02 4.74 -2.95 0.736 -- -1.07 -- -1.15 2.79 -- -- -- --
473.57 1.02 4.73 -2.93 0.767 -- -- -- -1.14 3.65 -- -- -- --
453.13 0.991 4.94 -4.82 -- -1.81 -- -- -2.03 -- 24.27 47520 1.36 24
565.82 1.11 4.58 -- 0.769 1.95 -- -- -0.44 3.59 16.79 47520 23.1 24
506.27 1.05 4.74 -2.89 -- -- -- -- -1.12 -- -- -- -- --
699.11 1.24 4.66 -- 0.71 -- -- -- -0.818 3.68 -- -- -- --
598.68 1.14 4.58 -- -- 1.91 -- -- -0.431 -- 16.79 47520 23.8 24
727.07 1.26 4.66 -- -- -- -- -- -0.802 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 374.87 temperature 30 1440 < th dose independent rect. 18 17
2 375.86 temperature 30 1440 > th dose independent rect. 18 17
3 378.95 temperature 30 1440 > th dose independent rect. 9 2
4 378.96 temperature 30 1440 < th dose independent rect. 9 2
5 379.18 humidity 80 14400 < th dose dependent rect. 18 12
6 379.29 temperature 30 1440 < th dose independent rect. 20 15
10 380.00 temperature 30 1440 < th dose independent rect. 7 4
16 380.20 temperature 30 1440 < th dose independent rect. 5 6
29 380.47 temperature 30 1440 < th dose independent rect. 22 13
30 380.51 atmosphere 1000 30 > th dose independent rect. 5 23
32 380.72 temperature 30 1440 < th dose independent rect. 3 8
36 381.26 temperature 30 1440 < th dose independent rect. 1 10
49 384.64 temperature 30 1440 > th dose dependent rect. 18 17
55 385.06 temperature 30 1440 > th dose dependent rect. 10 1
58 385.67 temperature 30 14400 > th dose independent rect. 18 15
59 385.69 temperature 30 1440 > th dose independent sin 9 NA
86 387.33 temperature 30 1440 < th dose independent sin 9 NA
90 387.69 humidity 80 14400 < th dose independent rect. 17 13
93 387.74 humidity 80 14400 > th dose independent rect. 17 13
101 388.10 temperature 30 1440 > th dose dependent sin 9 NA
156 388.97 wind 9 14400 > th dose dependent rect. 13 1
255 390.60 humidity 80 14400 < th dose independent sin 13 NA
292 390.98 temperature 30 14400 < th dose independent rect. 6 3
303 391.11 temperature 30 14400 < th dose independent rect. 21 12
307 391.17 temperature 30 14400 < th dose independent rect. 23 10
310 391.21 humidity 80 14400 > th dose independent sin 13 NA
338 391.36 temperature 30 14400 > th dose dependent rect. 18 15
459 392.63 atmosphere 1000 720 > th dose independent rect. 20 21
464 392.76 temperature 20 270 > th dose dependent sin 8 NA
513 393.29 humidity 80 14400 > th dose independent rect. 19 5
551 393.94 humidity 80 14400 > th dose independent rect. 20 1
566 394.11 temperature 20 270 > th dose dependent rect. 23 12
635 394.67 atmosphere 1000 90 < th dose independent rect. 17 22
638 394.71 temperature 30 14400 > th dose independent rect. 18 1
656 394.78 temperature 30 4320 < th dose independent rect. 17 6
659 394.80 atmosphere 1000 90 < th dose independent rect. 23 22
676 394.88 temperature 30 4320 < th dose independent rect. 17 9
719 395.08 temperature 30 4320 < th dose independent rect. 17 4
726 395.10 temperature 30 4320 < th dose independent rect. 17 11
730 395.12 atmosphere 1000 10 > th dose independent sin 5 NA
754 395.41 temperature 30 4320 < th dose independent rect. 17 13
757 395.47 temperature 30 4320 < th dose independent rect. 17 1
785 395.65 humidity 80 14400 < th dose dependent sin 11 NA
793 395.76 atmosphere 1000 10 < th dose independent rect. 22 22
799 395.87 temperature 25 14400 > th dose dependent rect. 7 1
882 396.35 atmosphere 1000 90 < th dose independent rect. 15 23
884 396.38 temperature 30 1440 > th dose dependent rect. 9 10
899 396.39 temperature 30 1440 > th dose dependent no NA NA