FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0300700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.0392) R2 : 0.0737
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.604 (0.106) R2dE : 0.0654 R2E : 0.0665
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.137 (0.0826) R2dN8 : 0.00726 R2N8 : 0.00837
σ : 0.735
deviance : 249.37
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.59
memory length : 1408
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
235.16 0.72 3.12 1.2 0.347 -1.12 -0.187 2.67 0.127 1.81 24.9 1224 -- --
237.49 0.718 3.2 0.52 0.325 -0.839 -0.0113 -- -0.0557 1.65 25.3 1225 -- --
235.15 0.714 3.12 1.18 0.365 -1.15 -- 2.72 0.122 1.29 24.91 1173 -- --
237.48 0.718 3.21 0.52 0.331 -0.838 -- -- -0.0635 1.66 25.31 1225 -- --
241.37 0.724 3.12 1.18 -- -0.994 -- 2.52 0.102 -- 25.39 1348 -- --
262.34 0.759 3.22 0.255 0.154 -- -0.747 -- -0.149 4.59 -- -- -- --
263.07 0.76 3.22 0.258 0.18 -- -- -- -0.146 2.05 -- -- -- --
242.79 0.726 3.2 0.519 -- -0.705 -- -- -0.0607 -- 25.3 1441 -- --
244.08 0.728 3.22 -- 0.32 -0.727 -- -- -0.136 1.69 25.53 1215 -- --
265.02 0.761 3.22 0.265 -- -- -- -- -0.141 -- -- -- -- --
264.82 0.761 3.23 -- 0.185 -- -- -- -0.174 2.09 -- -- -- --
249.37 0.735 3.22 -- -- -0.604 -- -- -0.137 -- 25.59 1408 -- --
266.87 0.763 3.23 -- -- -- -- -- -0.171 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 231.09 humidity 80.0 1440 < th dose independent rect. 11 2
2 231.32 humidity 60.0 1440 > th dose dependent rect. 11 2
4 232.03 humidity 80.0 1440 > th dose independent rect. 11 2
5 232.41 radiation 1.0 1440 > th dose independent rect. 18 21
6 232.48 radiation 1.0 1440 < th dose independent rect. 18 21
9 232.62 precipitation 0.1 14400 < th dose independent rect. 1 17
10 232.62 precipitation 0.1 14400 < th dose dependent rect. 1 17
11 232.73 precipitation 0.1 14400 > th dose independent rect. 1 17
20 233.08 temperature 25.0 14400 > th dose independent rect. 12 1
36 233.36 temperature 20.0 14400 > th dose independent rect. 18 1
38 233.42 temperature 20.0 14400 < th dose independent rect. 19 1
44 233.50 temperature 20.0 14400 < th dose independent rect. 18 3
48 233.57 temperature 25.0 14400 < th dose independent rect. 12 1
54 233.75 precipitation 0.1 14400 > th dose dependent rect. 24 20
57 233.77 humidity 70.0 14400 > th dose independent rect. 17 2
66 233.83 humidity 70.0 14400 < th dose independent rect. 17 2
67 233.83 humidity 80.0 1440 < th dose independent rect. 9 5
79 234.00 radiation 1.0 1440 < th dose dependent rect. 18 23
83 234.06 wind 3.0 43200 < th dose independent rect. 3 4
86 234.10 precipitation 0.1 14400 > th dose dependent sin 2 NA
91 234.14 wind 3.0 43200 > th dose independent rect. 3 4
94 234.17 humidity 60.0 14400 > th dose dependent rect. 12 1
96 234.20 humidity 60.0 14400 > th dose dependent rect. 17 2
114 234.33 humidity 70.0 14400 > th dose independent rect. 17 15
117 234.34 humidity 80.0 14400 < th dose independent rect. 8 1
146 234.50 humidity 60.0 14400 > th dose dependent rect. 12 7
149 234.52 humidity 70.0 14400 > th dose independent rect. 17 8
150 234.52 humidity 70.0 14400 > th dose independent rect. 17 10
155 234.54 humidity 70.0 14400 > th dose independent rect. 17 6
163 234.58 humidity 80.0 14400 < th dose independent rect. 8 12
178 234.65 humidity 80.0 14400 > th dose independent rect. 8 12
181 234.66 humidity 70.0 14400 < th dose independent rect. 17 14
187 234.67 humidity 90.0 14400 < th dose dependent rect. 17 2
188 234.68 humidity 80.0 14400 < th dose independent rect. 11 9
207 234.75 humidity 80.0 1440 > th dose independent rect. 9 5
211 234.76 radiation 1.0 1440 > th dose independent rect. 5 11
224 234.82 humidity 80.0 14400 < th dose independent rect. 13 7
230 234.83 radiation 1.0 1440 < th dose independent rect. 22 18
237 234.84 humidity 80.0 14400 > th dose independent rect. 11 9
238 234.84 radiation 1.0 1440 < th dose independent rect. 5 11
273 234.89 humidity 80.0 14400 > th dose independent rect. 8 1
276 234.90 precipitation 0.1 14400 < th dose independent sin 1 NA
278 234.90 precipitation 0.1 14400 < th dose dependent sin 1 NA
339 235.00 precipitation 0.1 14400 > th dose independent sin 1 NA
351 235.01 radiation 1.0 1440 < th dose dependent rect. 5 12
366 235.05 radiation 1.0 1440 < th dose independent rect. 2 14
370 235.06 temperature 25.0 14400 > th dose independent rect. 10 8
414 235.14 temperature 25.0 14400 < th dose independent rect. 10 8
480 235.25 humidity 90.0 14400 > th dose dependent sin 17 NA
494 235.27 precipitation 0.1 14400 > th dose independent rect. 13 18
508 235.29 humidity 90.0 14400 > th dose dependent rect. 9 17
515 235.31 precipitation 0.1 14400 < th dose independent rect. 13 18
519 235.31 precipitation 0.1 14400 < th dose dependent rect. 13 18
527 235.33 radiation 1.0 1440 > th dose independent sin 2 NA
547 235.36 humidity 70.0 14400 > th dose independent sin 12 NA
561 235.37 humidity 70.0 14400 < th dose independent sin 12 NA
589 235.40 humidity 90.0 14400 > th dose dependent rect. 12 14
590 235.40 radiation 1.0 1440 < th dose dependent rect. 22 19
623 235.44 humidity 60.0 14400 > th dose dependent sin 20 NA
640 235.46 radiation 1.0 1440 < th dose dependent sin 1 NA
644 235.47 radiation 1.0 1440 < th dose independent sin 2 NA
657 235.48 temperature 25.0 14400 < th dose independent rect. 4 12
670 235.49 precipitation 0.1 14400 > th dose independent rect. 15 16
717 235.53 precipitation 0.1 14400 < th dose independent rect. 15 16
724 235.53 precipitation 0.1 14400 < th dose dependent rect. 15 16
748 235.56 humidity 90.0 14400 > th dose dependent rect. 15 11
858 235.66 temperature 25.0 14400 > th dose independent sin 1 NA
871 235.66 radiation 1.0 1440 < th dose dependent rect. 2 15
950 235.72 temperature 25.0 14400 < th dose independent sin 1 NA
959 235.72 radiation 10.0 1440 < th dose dependent rect. 18 7
964 235.73 temperature 20.0 14400 > th dose independent rect. 18 6
972 235.73 radiation 10.0 1440 < th dose dependent rect. 18 9
990 235.75 precipitation 0.1 14400 > th dose independent rect. 9 22
991 235.75 precipitation 0.1 14400 < th dose independent rect. 9 22
1000 235.75 precipitation 0.1 14400 < th dose dependent rect. 9 22