Os11g0300400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os11g0300400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.3 | 0.206 | 12.3 | -0.158 | 0.697 | -0.531 | -0.474 | -0.899 | 0.125 | 21.7 | 10 | 91 | -- | -- |
| 20.23 | 0.209 | 12.3 | -0.157 | 0.661 | -0.56 | -0.21 | -- | 0.119 | 21.1 | 1.085 | 127 | -- | -- |
| 19.76 | 0.207 | 12.3 | -0.146 | 0.724 | -0.498 | -- | -0.532 | 0.126 | 21.7 | 10.2 | 127 | -- | -- |
| 20.17 | 0.209 | 12.3 | -0.156 | 0.696 | -0.5 | -- | -- | 0.129 | 21.5 | 3.727 | 128 | -- | -- |
| 35.28 | 0.278 | 12.3 | -0.14 | -- | -1.06 | -- | -0.209 | 0.093 | -- | -1.823 | 80 | -- | -- |
| 23.31 | 0.226 | 12.3 | -0.165 | 0.883 | -- | -0.0424 | -- | 0.0999 | 22.5 | -- | -- | -- | -- |
| 23.32 | 0.226 | 12.3 | -0.164 | 0.883 | -- | -- | -- | 0.1 | 22.5 | -- | -- | -- | -- |
| 35.3 | 0.277 | 12.2 | -0.167 | -- | -1.04 | -- | -- | 0.125 | -- | -14.78 | 40 | -- | -- |
| 20.83 | 0.213 | 12.3 | -- | 0.694 | -0.492 | -- | -- | 0.142 | 21.6 | 3.27 | 126 | -- | -- |
| 71.16 | 0.394 | 12.3 | -0.148 | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
| 24.03 | 0.229 | 12.3 | -- | 0.882 | -- | -- | -- | 0.118 | 22.5 | -- | -- | -- | -- |
| 35.94 | 0.28 | 12.3 | -- | -- | -1.06 | -- | -- | 0.108 | -- | -14.78 | 40 | -- | -- |
| 71.74 | 0.395 | 12.2 | -- | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.59 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 3 | 18.69 | radiation | 1 | 270 | > th | dose dependent | sin | 7 | NA |
| 4 | 18.69 | radiation | 40 | 270 | < th | dose dependent | sin | 6 | NA |
| 5 | 18.70 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 7 | 18.70 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 11 | 18.79 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 12 | 18.81 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 13 |
| 17 | 18.83 | radiation | 20 | 270 | < th | dose independent | sin | 8 | NA |
| 18 | 18.83 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 20 | 18.84 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 24 | 18.86 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 37 | 18.90 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 59 | 18.96 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 61 | 18.97 | radiation | 1 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 66 | 19.02 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 68 | 19.03 | humidity | 70 | 90 | > th | dose independent | sin | 5 | NA |
| 93 | 19.11 | temperature | 30 | 90 | < th | dose independent | sin | 5 | NA |
| 106 | 19.15 | radiation | 1 | 90 | > th | dose dependent | sin | 1 | NA |
| 110 | 19.16 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 123 | 19.17 | humidity | 60 | 90 | > th | dose dependent | sin | 2 | NA |
| 127 | 19.18 | radiation | 20 | 270 | > th | dose independent | sin | 7 | NA |
| 158 | 19.20 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 177 | 19.23 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 190 | 19.24 | radiation | 30 | 270 | > th | dose dependent | sin | 11 | NA |
| 197 | 19.27 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 14 |
| 219 | 19.29 | radiation | 40 | 90 | < th | dose independent | sin | 5 | NA |
| 259 | 19.31 | humidity | 70 | 90 | < th | dose independent | sin | 3 | NA |
| 263 | 19.31 | radiation | 10 | 90 | > th | dose dependent | no | NA | NA |
| 340 | 19.31 | radiation | 1 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 348 | 19.32 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 456 | 19.33 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 1 |
| 470 | 19.35 | radiation | 40 | 270 | > th | dose independent | sin | 11 | NA |
| 553 | 19.40 | radiation | 20 | 270 | > th | dose independent | rect. | 16 | 20 |
| 762 | 19.47 | radiation | 20 | 270 | > th | dose independent | rect. | 7 | 5 |
| 767 | 19.47 | radiation | 30 | 270 | > th | dose dependent | rect. | 7 | 3 |
| 921 | 19.53 | humidity | 90 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 953 | 19.54 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 954 | 19.55 | temperature | 30 | 90 | > th | dose independent | sin | 4 | NA |
| 965 | 19.56 | radiation | 10 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 967 | 19.57 | humidity | 70 | 90 | > th | dose independent | rect. | 3 | 16 |
| 970 | 19.57 | humidity | 90 | 90 | < th | dose dependent | sin | 2 | NA |