Os11g0298400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribulose bisphosphate carboxylase, small chain family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0298400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Ribulose bisphosphate carboxylase, small chain family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.41 | 0.475 | 7.86 | 1.35 | 0.931 | 0.687 | 0.554 | -0.784 | 0.366 | 16.3 | 24.6 | 723 | -- | -- |
| 104.15 | 0.475 | 7.89 | 1.19 | 0.968 | 0.727 | 0.718 | -- | 0.342 | 16.5 | 24.5 | 722 | -- | -- |
| 103.24 | 0.473 | 7.86 | 1.36 | 0.933 | 0.675 | -- | -0.817 | 0.365 | 16.3 | 24.6 | 721 | -- | -- |
| 104.69 | 0.477 | 7.89 | 1.12 | 0.934 | 0.638 | -- | -- | 0.291 | 16.2 | 24.6 | 722 | -- | -- |
| 136.96 | 0.545 | 7.82 | 1.55 | -- | 1.06 | -- | -1.47 | 0.483 | -- | 25.56 | 1126 | -- | -- |
| 119.54 | 0.513 | 7.94 | 0.886 | 0.92 | -- | 0.325 | -- | 0.0342 | 15.2 | -- | -- | -- | -- |
| 119.88 | 0.513 | 7.94 | 0.893 | 0.921 | -- | -- | -- | 0.036 | 15.1 | -- | -- | -- | -- |
| 139.17 | 0.549 | 7.87 | 1.14 | -- | 0.967 | -- | -- | 0.349 | -- | 25.51 | 1135 | -- | -- |
| 137.28 | 0.546 | 7.9 | -- | 0.917 | 0.618 | -- | -- | 0.235 | 16.2 | 24.9 | 757 | -- | -- |
| 168.16 | 0.606 | 7.94 | 0.854 | -- | -- | -- | -- | 0.012 | -- | -- | -- | -- | -- |
| 140.89 | 0.555 | 7.96 | -- | 0.903 | -- | -- | -- | -0.0634 | 15.1 | -- | -- | -- | -- |
| 171.12 | 0.609 | 7.92 | -- | -- | 0.625 | -- | -- | 0.106 | -- | 24.9 | 1083 | -- | -- |
| 187.39 | 0.639 | 7.96 | -- | -- | -- | -- | -- | -0.0827 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.77 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 16 |
| 2 | 98.78 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 17 |
| 13 | 98.96 | temperature | 25 | 720 | > th | dose independent | sin | 15 | NA |
| 25 | 99.21 | temperature | 25 | 720 | < th | dose independent | sin | 13 | NA |
| 76 | 100.05 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 86 | 100.23 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 87 | 100.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 162 | 101.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 163 | 101.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 166 | 101.55 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 184 | 101.81 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 9 |
| 194 | 101.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 195 | 101.99 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 223 | 102.26 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 11 |
| 250 | 102.46 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 7 |
| 257 | 102.52 | temperature | 10 | 30 | > th | dose dependent | sin | 12 | NA |
| 263 | 102.57 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 273 | 102.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 288 | 102.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 302 | 102.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 9 |
| 336 | 103.01 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 379 | 103.20 | temperature | 10 | 720 | > th | dose dependent | sin | 16 | NA |
| 385 | 103.23 | temperature | 30 | 10 | < th | dose dependent | sin | 12 | NA |
| 396 | 103.27 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 432 | 103.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 15 |
| 448 | 103.45 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 489 | 103.59 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 23 |
| 498 | 103.62 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 23 |
| 499 | 103.62 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 512 | 103.67 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 23 |
| 515 | 103.68 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 23 |
| 528 | 103.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 534 | 103.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 543 | 103.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 11 |
| 553 | 103.81 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 578 | 103.89 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 23 |
| 619 | 104.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 623 | 104.02 | temperature | 25 | 720 | < th | dose independent | rect. | 22 | 23 |
| 632 | 104.05 | temperature | 25 | 720 | < th | dose independent | rect. | 20 | 23 |
| 667 | 104.15 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 693 | 104.20 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 701 | 104.22 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 15 |
| 712 | 104.25 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 12 |
| 835 | 104.54 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 23 |
| 850 | 104.57 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 23 |
| 872 | 104.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 12 |
| 895 | 104.69 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 23 |
| 922 | 104.74 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 9 |
| 954 | 104.81 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 19 |
| 962 | 104.84 | temperature | 20 | 30 | > th | dose dependent | rect. | 18 | 14 |
| 983 | 104.90 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 15 |
| 989 | 104.94 | humidity | 80 | 1440 | > th | dose dependent | rect. | 12 | 1 |