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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0297800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-D-xylosidase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.68 (0.0434) R2 : 0.64
β1 : -2.93 (0.167) R2dD : 0.293 R2D : 0.0685
β2 : 1.97 (0.11) R2dC : 0.238 R2C : 0.164
β3 : 2.21 (0.175) R2dE : 0.141 R2E : -0.0615
β4 : -2.78 (0.476) R2dD*C : 0.0268 R2D*C : 0.000643
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.36 (0.0938) R2dN8 : 0.244 R2N8 : 0.0562
σ : 0.807
deviance : 300.33
__
_____
C
peak time of C : 7.86
E
wheather : radiation
threshold : 1.16
memory length : 4326
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.1
open length of G : 1.76

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
300.02 0.814 4.68 -2.53 1.9 2 -2.75 -1.72 -1.26 7.91 1.061 4335 18 1.77
300.33 0.807 4.68 -2.93 1.97 2.21 -2.78 -- -1.36 7.86 1.16 4326 18.1 1.76
321.95 0.836 4.68 -2.66 1.9 2.03 -- -1.68 -1.28 7.85 1.106 4334 18 1.75
321.55 0.835 4.68 -3.06 1.96 2.33 -- -- -1.39 7.75 1.265 4331 18.1 1.72
481.01 1.02 4.7 -2.73 -- 2.12 -- -1.72 -1.12 -- 0.6569 5534 18 1.79
407.29 0.946 4.64 -2.33 1.85 -- -2.77 -- -1.19 7.96 -- -- -- --
429.91 0.971 4.64 -2.41 1.86 -- -- -- -1.19 7.91 -- -- -- --
419.49 0.954 4.72 -2.92 -- 3.25 -- -- -1.42 -- 0.06431 5644 18.4 5.12
484.52 1.03 4.64 -- 2.45 3.1 -- -- -0.626 7.59 0.0233 4549 16.7 3.05
617.59 1.16 4.69 -2.39 -- -- -- -- -1.17 -- -- -- -- --
582.5 1.13 4.58 -- 1.84 -- -- -- -0.923 8.01 -- -- -- --
573 1.11 4.68 -- -- 3.24 -- -- -0.904 -- 0.01009 5537 18.2 6.93
767.77 1.29 4.63 -- -- -- -- -- -0.901 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 279.28 wind 5 43200 > th dose independent rect. 15 1
2 280.00 wind 5 43200 < th dose independent rect. 15 1
5 280.78 wind 3 43200 > th dose dependent rect. 15 1
15 282.78 wind 9 43200 < th dose dependent rect. 13 3
32 283.94 wind 5 43200 < th dose independent rect. 14 7
50 284.45 wind 3 43200 > th dose dependent rect. 13 8
53 284.53 wind 5 43200 > th dose independent rect. 14 7
61 284.76 wind 9 43200 > th dose dependent rect. 19 2
88 285.62 wind 9 43200 < th dose dependent rect. 11 10
221 288.92 humidity 80 43200 > th dose independent rect. 20 4
263 290.12 wind 9 43200 < th dose dependent sin 20 NA
284 290.40 wind 1 43200 > th dose dependent sin 20 NA
302 290.80 humidity 80 43200 < th dose independent rect. 20 4
408 292.85 wind 3 43200 > th dose independent rect. 9 7
421 293.07 wind 5 43200 < th dose independent sin 19 NA
440 293.37 wind 9 43200 > th dose independent rect. 18 3
468 293.96 humidity 80 43200 < th dose independent rect. 20 14
482 294.17 radiation 1 43200 > th dose independent rect. 18 1
492 294.20 wind 9 43200 < th dose independent rect. 18 3
499 294.24 radiation 1 14400 < th dose dependent rect. 18 2
501 294.26 radiation 1 43200 < th dose independent rect. 18 4
503 294.27 radiation 1 14400 < th dose dependent rect. 18 4
504 294.28 radiation 1 43200 < th dose independent rect. 18 2
506 294.29 radiation 1 43200 < th dose independent rect. 18 6
507 294.29 radiation 1 43200 < th dose independent rect. 18 9
520 294.34 radiation 1 14400 < th dose dependent rect. 4 1
528 294.39 wind 1 43200 > th dose independent rect. 2 1
566 294.81 humidity 80 43200 < th dose dependent rect. 20 3
570 294.84 radiation 1 14400 < th dose dependent rect. 18 9
581 295.07 humidity 80 43200 > th dose independent rect. 20 13
589 295.13 wind 5 43200 > th dose independent sin 19 NA
616 295.38 radiation 20 43200 > th dose independent rect. 9 1
664 296.07 wind 1 43200 > th dose independent rect. 8 3
733 296.78 wind 1 43200 > th dose independent rect. 24 1
858 298.21 radiation 10 43200 > th dose dependent rect. 9 1
883 298.37 humidity 80 43200 < th dose independent rect. 21 1
948 298.84 humidity 80 43200 < th dose independent rect. 3 6
958 298.96 humidity 50 43200 < th dose independent rect. 14 1