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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0297300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-D-xylosidase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.82 (0.0286) R2 : 0.00205
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0584 (0.0602) R2dN8 : 0.00265 R2N8 : 0.00205
σ : 0.539
deviance : 133.31
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
115.35 0.505 2.8 0.522 0.133 0.839 0.166 1.1 0.241 17.6 27.18 1478 -- --
116.3 0.502 2.78 0.738 0.135 0.749 0.175 -- 0.272 17.5 30.73 1480 -- --
115.42 0.5 2.8 0.518 0.134 0.836 -- 1.11 0.241 17.5 27.24 1477 -- --
116.39 0.502 2.78 0.739 0.136 0.746 -- -- 0.271 17.5 30.85 1485 -- --
116.28 0.502 2.8 0.511 -- 0.84 -- 1.12 0.237 -- 27.6 1420 -- --
125.51 0.525 2.81 0.499 0.156 -- 0.189 -- 0.116 17.2 -- -- -- --
125.6 0.525 2.81 0.499 0.157 -- -- -- 0.117 17.1 -- -- -- --
117.26 0.504 2.78 0.738 -- 0.763 -- -- 0.273 -- 30.91 1410 -- --
128.53 0.531 2.81 -- 0.29 0.585 -- -- 0.131 15.7 37.03 1473 -- --
126.89 0.526 2.81 0.493 -- -- -- -- 0.113 -- -- -- -- --
132.16 0.538 2.83 -- 0.148 -- -- -- 0.0615 17.3 -- -- -- --
129.52 0.53 2.81 -- -- 0.437 -- -- 0.124 -- 43.9 1390 -- --
133.31 0.539 2.82 -- -- -- -- -- 0.0584 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 114.41 temperature 20 1440 > th dose independent rect. 4 3
3 114.54 temperature 20 1440 < th dose independent rect. 5 1
5 114.56 temperature 20 1440 < th dose independent rect. 4 3
13 115.00 temperature 20 1440 > th dose dependent rect. 23 12
15 115.01 temperature 20 1440 > th dose dependent rect. 24 8
18 115.04 atmosphere 1005 10 > th dose dependent rect. 15 3
23 115.07 temperature 25 1440 < th dose dependent rect. 11 1
27 115.09 temperature 25 1440 < th dose dependent rect. 4 15
35 115.12 temperature 30 1440 < th dose dependent rect. 23 17
40 115.14 temperature 25 1440 < th dose dependent rect. 4 12
42 115.15 temperature 20 1440 > th dose dependent sin 7 NA
67 115.21 temperature 25 1440 < th dose dependent sin 2 NA
83 115.23 temperature 20 1440 > th dose dependent rect. 24 1
90 115.24 temperature 25 1440 < th dose dependent rect. 4 8
99 115.27 temperature 20 1440 > th dose dependent rect. 2 1
121 115.31 temperature 20 1440 > th dose dependent rect. 5 2
148 115.34 temperature 30 1440 < th dose dependent sin 5 NA
157 115.35 temperature 20 1440 > th dose dependent rect. 24 3
161 115.35 temperature 30 1440 < th dose dependent rect. 24 12
168 115.36 temperature 25 1440 < th dose independent rect. 12 15
292 115.47 temperature 30 1440 < th dose dependent rect. 9 21
319 115.49 temperature 30 1440 < th dose dependent rect. 14 22
421 115.55 temperature 30 1440 < th dose dependent no NA NA
495 115.58 temperature 20 1440 > th dose dependent rect. 14 22
552 115.61 temperature 25 1440 < th dose dependent rect. 4 1
614 115.64 temperature 25 1440 < th dose independent sin 17 NA
615 115.64 temperature 25 1440 > th dose independent rect. 12 14
616 115.64 temperature 25 1440 < th dose independent rect. 22 21
635 115.65 temperature 25 1440 < th dose independent rect. 20 23
669 115.66 temperature 20 1440 > th dose dependent rect. 14 18
721 115.68 temperature 30 1440 < th dose dependent rect. 14 17
731 115.68 temperature 20 1440 > th dose dependent rect. 9 22
767 115.70 temperature 30 1440 < th dose dependent rect. 4 3
840 115.73 temperature 25 1440 < th dose independent no NA NA
843 115.73 temperature 25 1440 < th dose independent rect. 17 23
891 115.75 temperature 20 1440 > th dose dependent no NA NA
893 115.75 temperature 30 1440 < th dose dependent rect. 2 6
977 115.78 temperature 25 1440 < th dose independent rect. 2 23