Os11g0294800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os11g0294800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.81 | 0.229 | 10.9 | 1.04 | 0.274 | -0.647 | -0.806 | -1.75 | 0.134 | 3.95 | 10.66 | 7 | -- | -- |
| 25.65 | 0.238 | 10.8 | 1.29 | 0.285 | -0.679 | -0.382 | -- | 0.201 | 4.32 | 10.66 | 7 | -- | -- |
| 25.13 | 0.235 | 10.8 | 1.14 | 0.283 | -0.633 | -- | -1.05 | 0.161 | 4.1 | 4.603 | 2 | -- | -- |
| 26.04 | 0.239 | 10.8 | 1.28 | 0.289 | -0.649 | -- | -- | 0.199 | 4.13 | 4.603 | 2 | -- | -- |
| 28.33 | 0.249 | 10.8 | 1.19 | -- | -0.916 | -- | -1.13 | 0.203 | -- | 7.629 | 2 | -- | -- |
| 29.89 | 0.256 | 10.9 | 1.16 | 0.461 | -- | -0.202 | -- | 0.108 | 3.46 | -- | -- | -- | -- |
| 30.02 | 0.257 | 10.9 | 1.16 | 0.459 | -- | -- | -- | 0.109 | 3.42 | -- | -- | -- | -- |
| 28.21 | 0.248 | 10.8 | 1.32 | -- | -0.765 | -- | -- | 0.24 | -- | 21.1 | 2 | -- | -- |
| 65.43 | 0.379 | 10.9 | -- | 0.475 | -0.0285 | -- | -- | -0.0167 | 3.43 | -26.63 | 8 | -- | -- |
| 41.88 | 0.302 | 10.9 | 1.18 | -- | -- | -- | -- | 0.121 | -- | -- | -- | -- | -- |
| 65.44 | 0.378 | 10.9 | -- | 0.482 | -- | -- | -- | -0.02 | 3.41 | -- | -- | -- | -- |
| 71.79 | 0.395 | 10.9 | -- | -- | -0.514 | -- | -- | 0.0387 | -- | 24.1 | 2 | -- | -- |
| 78.53 | 0.414 | 10.9 | -- | -- | -- | -- | -- | -0.0095 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.80 | temperature | 10 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 7 | 23.60 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 10 | 23.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 11 |
| 14 | 23.86 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 16 | 23.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 22 | 23.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 25 | 23.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 30 | 23.97 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 53 | 24.05 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 69 | 24.08 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 71 | 24.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 72 | 24.09 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 4 |
| 75 | 24.10 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 77 | 24.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 80 | 24.11 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 87 | 24.11 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 89 | 24.11 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 16 |
| 97 | 24.12 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 98 | 24.12 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 99 | 24.12 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 3 |
| 137 | 24.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 143 | 24.14 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 177 | 24.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 185 | 24.16 | temperature | 25 | 1440 | > th | dose dependent | sin | 7 | NA |
| 193 | 24.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 222 | 24.19 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 18 |
| 223 | 24.20 | temperature | 30 | 4320 | < th | dose independent | sin | 8 | NA |
| 238 | 24.20 | radiation | 10 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 256 | 24.22 | temperature | 30 | 4320 | > th | dose independent | sin | 8 | NA |
| 339 | 24.26 | radiation | 1 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 341 | 24.26 | radiation | 30 | 4320 | < th | dose dependent | rect. | 15 | 16 |
| 431 | 24.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 463 | 24.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 17 |
| 469 | 24.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 536 | 24.32 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 571 | 24.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 607 | 24.33 | temperature | 25 | 4320 | > th | dose dependent | sin | 15 | NA |
| 624 | 24.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 687 | 24.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 727 | 24.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 728 | 24.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 763 | 24.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 769 | 24.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 783 | 24.37 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 820 | 24.38 | temperature | 30 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 835 | 24.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 925 | 24.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 927 | 24.40 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 938 | 24.41 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 1 |