Os11g0291900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os11g0291900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.07 | 0.53 | 5.95 | 0.654 | 0.511 | 1.85 | 0.45 | -0.0023 | -0.273 | 10.3 | 24.8 | 718 | -- | -- |
| 127.07 | 0.525 | 5.95 | 0.654 | 0.511 | 1.85 | 0.45 | -- | -0.273 | 10.3 | 24.8 | 718 | -- | -- |
| 127.76 | 0.526 | 5.95 | 0.624 | 0.508 | 1.87 | -- | 0.291 | -0.282 | 10.4 | 24.8 | 718 | -- | -- |
| 127.86 | 0.527 | 5.95 | 0.673 | 0.507 | 1.84 | -- | -- | -0.27 | 10.4 | 24.83 | 714 | -- | -- |
| 136.08 | 0.543 | 5.95 | 0.806 | -- | 2.14 | -- | -0.529 | -0.28 | -- | 32.8 | 811 | -- | -- |
| 177.27 | 0.624 | 6.03 | 0.14 | 0.763 | -- | 0.377 | -- | -0.651 | 10.3 | -- | -- | -- | -- |
| 177.84 | 0.624 | 6.02 | 0.156 | 0.76 | -- | -- | -- | -0.65 | 10.3 | -- | -- | -- | -- |
| 136.22 | 0.544 | 5.96 | 0.73 | -- | 2.19 | -- | -- | -0.291 | -- | 32.7 | 806 | -- | -- |
| 137.47 | 0.546 | 5.98 | -- | 0.61 | 1.59 | -- | -- | -0.409 | 10.7 | 24.4 | 542 | -- | -- |
| 213.08 | 0.682 | 6.04 | 0.144 | -- | -- | -- | -- | -0.652 | -- | -- | -- | -- | -- |
| 178.48 | 0.625 | 6.03 | -- | 0.76 | -- | -- | -- | -0.668 | 10.3 | -- | -- | -- | -- |
| 148.65 | 0.568 | 5.99 | -- | -- | 1.92 | -- | -- | -0.415 | -- | 33.08 | 775 | -- | -- |
| 213.63 | 0.682 | 6.05 | -- | -- | -- | -- | -- | -0.668 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 119.31 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 3 | 119.50 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 4 | 119.50 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 13 | 120.73 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 14 | 120.82 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 27 | 121.61 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 33 | 121.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 34 | 122.00 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 44 | 122.45 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 66 | 123.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 81 | 123.62 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 21 |
| 120 | 124.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 22 |
| 134 | 124.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 148 | 124.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 149 | 124.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 7 |
| 151 | 125.00 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 7 |
| 156 | 125.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 163 | 125.09 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 182 | 125.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 185 | 125.24 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 229 | 125.46 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 11 |
| 230 | 125.47 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 247 | 125.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 11 |
| 298 | 125.66 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 316 | 125.71 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 352 | 125.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 386 | 125.89 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 410 | 125.94 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 411 | 125.94 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 421 | 125.96 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 455 | 126.05 | wind | 7 | 43200 | > th | dose independent | sin | 11 | NA |
| 566 | 126.30 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 598 | 126.36 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 649 | 126.47 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 663 | 126.50 | wind | 7 | 43200 | > th | dose dependent | sin | 12 | NA |
| 670 | 126.52 | radiation | 1 | 4320 | > th | dose dependent | rect. | 18 | 12 |
| 672 | 126.53 | radiation | 1 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 694 | 126.58 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 742 | 126.68 | wind | 7 | 43200 | < th | dose independent | sin | 11 | NA |
| 784 | 126.76 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 859 | 126.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 19 |
| 866 | 126.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 932 | 127.06 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 21 |
| 944 | 127.09 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 951 | 127.11 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 952 | 127.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 968 | 127.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 979 | 127.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 994 | 127.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |