Os11g0291500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-D-xylosidase.
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Os11g0291500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Beta-D-xylosidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 240.24 | 0.728 | 2.84 | 0.505 | 0.206 | 0.611 | 0.381 | 1.93 | -0.127 | 17.2 | 1.08 | 4361 | -- | -- |
| 245.8 | 0.73 | 2.86 | 0.265 | 0.00295 | 0.471 | -0.368 | -- | -0.133 | 4.71 | 3.891 | 4930 | -- | -- |
| 240.53 | 0.722 | 2.84 | 0.529 | 0.191 | 0.645 | -- | 2.04 | -0.125 | 17.4 | 1.079 | 4378 | -- | -- |
| 245.11 | 0.729 | 2.86 | 0.264 | 0.0565 | 0.539 | -- | -- | -0.208 | 17.8 | 3.469 | 9236 | -- | -- |
| 242.36 | 0.725 | 2.83 | 0.495 | -- | 0.659 | -- | 2.04 | -0.133 | -- | 0.96 | 4481 | -- | -- |
| 248.33 | 0.739 | 2.85 | 0.191 | 0.198 | -- | 0.45 | -- | -0.108 | 16.4 | -- | -- | -- | -- |
| 248.84 | 0.739 | 2.85 | 0.195 | 0.205 | -- | -- | -- | -0.105 | 16.9 | -- | -- | -- | -- |
| 244.96 | 0.729 | 2.86 | 0.268 | -- | 0.555 | -- | -- | -0.208 | -- | 2.757 | 9254 | -- | -- |
| 245.43 | 0.73 | 2.86 | -- | 0.0613 | 0.517 | -- | -- | -0.202 | 17.4 | 2.078 | 9258 | -- | -- |
| 251.05 | 0.74 | 2.85 | 0.187 | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
| 249.84 | 0.739 | 2.86 | -- | 0.201 | -- | -- | -- | -0.127 | 17 | -- | -- | -- | -- |
| 245.1 | 0.729 | 2.86 | -- | -- | 0.574 | -- | -- | -0.202 | -- | 2.03 | 12131 | -- | -- |
| 251.97 | 0.741 | 2.85 | -- | -- | -- | -- | -- | -0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 227.92 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 15 | 228.01 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 29 | 232.62 | humidity | 60.0 | 10 | < th | dose independent | rect. | 17 | 1 |
| 45 | 233.75 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 17 | 1 |
| 350 | 235.31 | temperature | 30.0 | 10 | > th | dose independent | rect. | 13 | 5 |
| 351 | 235.46 | temperature | 30.0 | 720 | < th | dose independent | rect. | 1 | 9 |
| 352 | 235.53 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 354 | 235.67 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 1 | 8 |
| 355 | 235.70 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 357 | 235.72 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 359 | 235.79 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 369 | 235.92 | temperature | 30.0 | 720 | < th | dose independent | rect. | 21 | 14 |
| 371 | 235.95 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 377 | 236.01 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 14 | 9 |
| 388 | 236.38 | atmosphere | 1005.0 | 30 | < th | dose independent | rect. | 15 | 7 |
| 409 | 236.72 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 12 | 2 |
| 414 | 236.79 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 13 | 22 |
| 424 | 237.07 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 6 |
| 440 | 237.09 | temperature | 30.0 | 720 | > th | dose independent | sin | 7 | NA |
| 443 | 237.17 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 451 | 237.33 | temperature | 30.0 | 720 | < th | dose independent | sin | 7 | NA |
| 469 | 237.39 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 490 | 237.43 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 8 |
| 498 | 237.49 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 505 | 237.55 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 508 | 237.57 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 512 | 237.60 | wind | 5.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 514 | 237.61 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 13 | 5 |
| 517 | 237.64 | wind | 9.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 518 | 237.64 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 521 | 237.64 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 525 | 237.64 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 527 | 237.64 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 532 | 237.64 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 534 | 237.64 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 535 | 237.64 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 540 | 237.64 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 543 | 237.66 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 599 | 237.80 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 615 | 237.83 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 655 | 238.01 | temperature | 30.0 | 10 | > th | dose independent | rect. | 13 | 22 |
| 679 | 238.13 | humidity | 60.0 | 270 | < th | dose dependent | rect. | 12 | 2 |
| 701 | 238.18 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 718 | 238.20 | temperature | 30.0 | 720 | > th | dose independent | rect. | 11 | 3 |
| 739 | 238.24 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 15 | 10 |
| 746 | 238.28 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 756 | 238.35 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 14 | 11 |
| 773 | 238.40 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 782 | 238.45 | radiation | 40.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 873 | 238.69 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 892 | 238.73 | temperature | 30.0 | 10 | > th | dose independent | rect. | 9 | 9 |
| 907 | 238.74 | temperature | 30.0 | 720 | < th | dose independent | rect. | 3 | 12 |
| 966 | 239.00 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 968 | 239.01 | temperature | 30.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 977 | 239.04 | atmosphere | 1005.0 | 90 | < th | dose independent | sin | 17 | NA |