FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0286500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0397) R2 : 0.0595
β1 : -0.772 (0.145) R2dD : 0.0603 R2D : 0.0504
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.154 (0.0847) R2dN8 : 0.00912 R2N8 : -0.000796
σ : 0.745
deviance : 254.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
228.28 0.71 2.94 -0.238 0.257 0.79 -0.855 -1.41 0.0571 6.14 1012 5028 -- --
232.72 0.711 2.97 -0.455 0.248 0.791 -0.698 -- 0.0115 6.06 1011 6109 -- --
230.06 0.706 2.95 -0.256 0.256 0.798 -- -1.35 0.0567 6.26 1012 5021 -- --
234.1 0.713 2.97 -0.448 0.253 0.786 -- -- 0.019 6.52 1011 6189 -- --
233.37 0.711 2.95 -0.254 -- 0.774 -- -1.35 0.0605 -- 1012 5066 -- --
250.19 0.742 3.01 -0.77 0.236 -- -0.678 -- -0.161 6.28 -- -- -- --
251.29 0.742 3.01 -0.777 0.233 -- -- -- -0.159 6.66 -- -- -- --
237.09 0.717 2.98 -0.406 -- 0.725 -- -- 0.0193 -- 1012 7617 -- --
237.76 0.718 2.95 -- 0.237 0.868 -- -- 0.0903 6.56 1012 7568 -- --
254.13 0.745 3.01 -0.772 -- -- -- -- -0.154 -- -- -- -- --
267.22 0.765 2.99 -- 0.224 -- -- -- -0.072 6.87 -- -- -- --
240.66 0.723 2.96 -- -- 0.86 -- -- 0.0912 -- 1012 7613 -- --
269.85 0.767 3 -- -- -- -- -- -0.0683 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 225.87 humidity 50.0 43200 > th dose dependent rect. 5 7
6 226.22 humidity 90.0 43200 < th dose dependent rect. 10 1
19 226.57 humidity 90.0 43200 < th dose dependent rect. 6 6
21 226.64 humidity 50.0 43200 > th dose dependent rect. 7 2
42 226.79 humidity 50.0 43200 > th dose dependent sin 3 NA
78 227.07 precipitation 0.1 14400 > th dose independent rect. 5 3
86 227.13 precipitation 0.1 14400 > th dose dependent rect. 5 3
99 227.21 precipitation 0.1 14400 < th dose independent rect. 5 3
100 227.21 humidity 90.0 43200 < th dose dependent sin 1 NA
101 227.21 precipitation 0.1 14400 < th dose dependent rect. 5 3
131 227.35 precipitation 0.1 14400 > th dose independent rect. 6 1
132 227.35 precipitation 0.1 14400 > th dose dependent rect. 6 1
225 227.69 wind 5.0 14400 > th dose dependent rect. 11 1
242 227.73 humidity 50.0 43200 < th dose dependent rect. 10 1
261 227.80 humidity 60.0 43200 < th dose dependent rect. 9 3
263 227.81 precipitation 0.1 14400 < th dose independent rect. 6 1
264 227.81 precipitation 0.1 14400 < th dose dependent rect. 6 1
277 227.84 humidity 60.0 43200 > th dose independent rect. 6 4
278 227.84 humidity 60.0 43200 < th dose dependent rect. 7 5
288 227.87 humidity 60.0 43200 < th dose dependent rect. 16 20
313 227.93 humidity 80.0 43200 < th dose dependent rect. 13 1
318 227.93 humidity 60.0 43200 < th dose dependent rect. 5 9
324 227.94 humidity 50.0 43200 < th dose independent sin 14 NA
337 227.96 humidity 60.0 43200 < th dose dependent sin 5 NA
345 227.96 humidity 60.0 43200 < th dose dependent rect. 22 16
348 227.97 humidity 60.0 43200 < th dose independent rect. 7 3
350 227.97 humidity 50.0 43200 < th dose independent rect. 14 21
433 228.06 humidity 50.0 43200 < th dose dependent sin 10 NA
467 228.08 wind 7.0 14400 < th dose independent rect. 11 1
484 228.10 wind 7.0 14400 > th dose independent rect. 11 1
491 228.11 humidity 50.0 43200 < th dose independent rect. 14 18
504 228.12 humidity 50.0 43200 > th dose independent rect. 16 21
598 228.19 humidity 50.0 43200 > th dose independent rect. 13 22
618 228.20 humidity 50.0 43200 > th dose independent rect. 9 1
639 228.22 humidity 50.0 43200 < th dose independent rect. 9 2
656 228.23 humidity 60.0 43200 < th dose independent rect. 22 16
677 228.25 humidity 50.0 43200 > th dose independent sin 15 NA
678 228.25 humidity 50.0 43200 > th dose independent rect. 9 23
686 228.25 humidity 60.0 43200 < th dose dependent rect. 3 21
690 228.26 humidity 50.0 43200 < th dose independent sin 10 NA
692 228.26 humidity 60.0 43200 < th dose independent rect. 20 19
694 228.26 humidity 50.0 43200 < th dose independent rect. 9 22
697 228.26 humidity 60.0 43200 < th dose dependent no NA NA
707 228.26 humidity 60.0 43200 < th dose dependent rect. 3 18
735 228.26 humidity 60.0 43200 < th dose dependent rect. 22 23
739 228.27 humidity 50.0 43200 < th dose independent rect. 13 9
747 228.27 humidity 50.0 43200 > th dose independent rect. 13 19
751 228.27 humidity 60.0 43200 < th dose dependent rect. 5 16
773 228.28 humidity 50.0 43200 < th dose independent rect. 17 19
776 228.28 humidity 50.0 43200 > th dose independent rect. 19 23
798 228.29 humidity 50.0 43200 > th dose independent rect. 3 19
828 228.29 humidity 60.0 43200 < th dose dependent rect. 9 23
829 228.30 humidity 50.0 43200 > th dose independent no NA NA
830 228.30 humidity 50.0 43200 < th dose independent no NA NA
836 228.30 humidity 50.0 43200 < th dose independent rect. 3 19
866 228.30 humidity 50.0 43200 < th dose independent rect. 19 23
960 228.33 humidity 70.0 43200 > th dose independent rect. 2 12
992 228.34 humidity 60.0 43200 < th dose independent rect. 3 8
1000 228.34 humidity 50.0 43200 < th dose independent rect. 9 13