Os11g0283500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os11g0283500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.27 | 0.352 | 10.7 | -0.19 | 0.518 | 0.933 | -0.786 | 0.0793 | 0.142 | 11.1 | 19.93 | 1258 | -- | -- |
| 56.27 | 0.349 | 10.7 | -0.213 | 0.518 | 0.938 | -0.793 | -- | 0.137 | 11.1 | 19.92 | 1256 | -- | -- |
| 58.12 | 0.355 | 10.7 | -0.119 | 0.565 | 0.954 | -- | 0.521 | 0.146 | 10.3 | 19.21 | 1194 | -- | -- |
| 58.32 | 0.356 | 10.7 | -0.23 | 0.544 | 0.923 | -- | -- | 0.136 | 10.3 | 20.1 | 1239 | -- | -- |
| 73.03 | 0.398 | 10.7 | -0.259 | -- | 0.852 | -- | -0.0469 | 0.136 | -- | 20.14 | 1474 | -- | -- |
| 81.65 | 0.424 | 10.7 | 0.115 | 0.43 | -- | -0.774 | -- | 0.346 | 10.6 | -- | -- | -- | -- |
| 83.09 | 0.427 | 10.7 | 0.079 | 0.464 | -- | -- | -- | 0.34 | 9.46 | -- | -- | -- | -- |
| 73.02 | 0.398 | 10.7 | -0.241 | -- | 0.843 | -- | -- | 0.14 | -- | 20.19 | 1473 | -- | -- |
| 59.66 | 0.36 | 10.7 | -- | 0.54 | 0.842 | -- | -- | 0.174 | 10.3 | 20.61 | 1237 | -- | -- |
| 95.73 | 0.457 | 10.7 | 0.076 | -- | -- | -- | -- | 0.342 | -- | -- | -- | -- | -- |
| 83.26 | 0.427 | 10.7 | -- | 0.464 | -- | -- | -- | 0.332 | 9.44 | -- | -- | -- | -- |
| 74.32 | 0.402 | 10.7 | -- | -- | 0.756 | -- | -- | 0.183 | -- | 20.91 | 1460 | -- | -- |
| 95.88 | 0.457 | 10.7 | -- | -- | -- | -- | -- | 0.333 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 2 | 45.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 3 | 45.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 9 | 45.74 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 68 | 48.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 237 | 51.95 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 3 |
| 247 | 52.06 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 253 | 52.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 16 |
| 323 | 52.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 7 |
| 344 | 53.10 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 416 | 53.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 675 | 55.44 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 21 |
| 682 | 55.49 | radiation | 40 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 689 | 55.53 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 19 |
| 703 | 55.64 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 714 | 55.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 778 | 55.92 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 2 |
| 780 | 55.93 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 16 |
| 789 | 55.99 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 16 |
| 837 | 56.26 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 15 |
| 838 | 56.27 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 857 | 56.34 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 886 | 56.44 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 915 | 56.53 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 947 | 56.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |